Basic Information
Locus ID:
Lb2G14941
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 437038291 | 437045277 | - | Lb2G14941 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 97,633.53 Da | 41.54 | 77.06 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 406 | 462 | 1.51449E-26 | - |
| CDD | cd18635 | CD_CMT3_like | 406 | 462 | 1.51449E-26 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 407 | 461 | 9.9E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 154 | 262 | 2.1E-10 | IPR001025 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 407 | 461 | 9.9E-11 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 471 | 824 | 1.3E-35 | IPR001525 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 471 | 824 | 1.3E-35 | IPR001525 |
| Pfam | PF01426 | BAH domain | 154 | 262 | 2.1E-10 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 314 | 824 | 5.79E-78 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 314 | 824 | 5.79E-78 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 395 | 462 | 3.85E-14 | IPR016197 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 395 | 462 | 3.85E-14 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 257 | 2.5E-45 | IPR043151 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 625 | 790 | 1.0E-239 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 316 | 841 | 1.0E-239 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 88 | 257 | 2.5E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 316 | 841 | 1.0E-239 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 625 | 790 | 1.0E-239 | - |
| SMART | SM00439 | BAH_4 | 153 | 272 | 5.9E-18 | IPR001025 |
| SMART | SM00439 | BAH_4 | 153 | 272 | 5.9E-18 | IPR001025 |
| SMART | SM00298 | chromo_7 | 406 | 465 | 3.9E-11 | IPR000953 |
| SMART | SM00298 | chromo_7 | 406 | 465 | 3.9E-11 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 475 | 821 | 2.0E-29 | IPR001525 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 475 | 821 | 2.0E-29 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 314 | 831 | 45.054195 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 407 | 460 | 13.136701 | IPR000953 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 407 | 460 | 13.136701 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 153 | 272 | 17.013699 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 314 | 831 | 45.054195 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 153 | 272 | 17.013699 | IPR001025 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 477 | 489 | - | IPR018117 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 477 | 489 | - | IPR018117 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 430 | 450 | - | IPR023779 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 430 | 450 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 520 | 534 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 566 | 579 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 315 | 331 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 315 | 331 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 566 | 579 | 5.0E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 520 | 534 | 5.0E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 846 | 866 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 294 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G69770.1 | chromomethylase 3. Encodes a chromomethylase involved in methylating cytosine residues at non-CG sites. Involved in preferentially methylating transposon-related sequences, reducing their mobility. CMT3 interacts with an Arabidopsis homologue of HP1 (heterochromatin protein 1), which in turn interacts with methylated histones. Involved in gene silencing. | 0 |
| RefSeq | XP_010673524.2 | DNA (cytosine-5)-methyltransferase CMT3 [Beta vulgaris subsp. vulgaris] | 0 |
| C0SQ89 | DNA (cytosine-5)-methyltransferase CMT3 OS=Oryza sativa subsp. japonica OX=39947 GN=CMT3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5C480 | DNA (cytosine-5-)-methyltransferase OS=Nyssa sinensis OX=561372 GN=F0562_001358 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology