halophFGD

Basic Information

Locus ID: Lb2G14533

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: WRKY transcription factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	364102630	364105844	-	Lb2G14533

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.80	63,632.30 Da	62.26	47.97	-0.86

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03106	WRKY DNA -binding domain	295	351	2.3E-25	IPR003657
Pfam	PF03106	WRKY DNA -binding domain	477	534	4.8E-24	IPR003657
Pfam	PF03106	WRKY DNA -binding domain	477	534	4.8E-24	IPR003657
Pfam	PF03106	WRKY DNA -binding domain	295	351	2.3E-25	IPR003657
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	468	536	5.36E-28	IPR036576
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	292	353	5.89E-26	IPR036576
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	468	536	5.36E-28	IPR036576
SUPERFAMILY	SSF118290	WRKY DNA-binding domain	292	353	5.89E-26	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	283	354	7.5E-28	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	461	537	5.7E-34	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	283	354	7.5E-28	IPR036576
Gene3D	G3DSA:2.20.25.80	WRKY domain	461	537	5.7E-34	IPR036576
SMART	SM00774	WRKY_cls	294	352	6.9E-37	IPR003657
SMART	SM00774	WRKY_cls	476	535	4.9E-37	IPR003657
SMART	SM00774	WRKY_cls	294	352	6.9E-37	IPR003657
SMART	SM00774	WRKY_cls	476	535	4.9E-37	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	289	353	24.523823	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	471	536	36.598049	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	471	536	36.598049	IPR003657
ProSiteProfiles	PS50811	WRKY domain profile.	289	353	24.523823	IPR003657
MobiDBLite	mobidb-lite	consensus disorder prediction	94	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	343	357	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	343	372	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	427	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	451	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	556	579	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	233	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	213	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	343	372	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	451	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	213	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	233	278	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	372	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	92	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	556	579	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	427	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	556	578	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	92	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	556	578	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	343	357	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	94	131	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	372	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription)

Molecular Function:

GO:0003700 (DNA-binding transcription factor activity) GO:0043565 (sequence-specific DNA binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G03340.1	WRKY DNA-binding protein 3. Encodes WRKY DNA-binding protein 3 (WRKY3).
RefSeq	XP_050226372.1	probable WRKY transcription factor 4 isoform X1 [Mercurialis annua]
Swiss-Prot	Q9ZQ70	Probable WRKY transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=WRKY3 PE=2 SV=1
TrEMBL	A0A4V1I1W3	WRKY transcription factor OS=Fagopyrum tataricum OX=62330 PE=2 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg19773, jg34803, jg40231, jg7130
Aizoaceae	Mesembryanthemum crystallinum	2	gene_3826, gene_5152
Amaranthaceae	Atriplex hortensis	1	Ah013083
Amaranthaceae	Beta vulgaris	2	BVRB_2g040120, BVRB_6g153180
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg17453, Sbi_jg29714, Sbi_jg42996, Sbi_jg43233 ... Sbi_jg45604
Amaranthaceae	Salicornia europaea	3	Seu_jg11449, Seu_jg18663, Seu_jg709
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00002085, GOSA_00004410, GOSA_00004411
Amaranthaceae	Suaeda glauca	5	Sgl35737, Sgl35742, Sgl41054, Sgl66472, Sgl70806
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003876, gene:ENSEOMG00000012724 ... gene:ENSEOMG00000020342, gene:ENSEOMG00000028696, gene:ENSEOMG00000049171
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0006740, CQ.Regalona.r1.2BG0006980 ... CQ.Regalona.r1.6AG0000420, CQ.Regalona.r1.6BG0000410
Anacardiaceae	Pistacia vera	3	pistato.v30193740, pistato.v30194270, pistato.v30227300
Apiaceae	Apium graveolens	1	Ag6G00421
Arecaceae	Cocos nucifera	4	COCNU_05G002490, COCNU_06G016870, COCNU_13G006210 ... COCNU_14G010800
Arecaceae	Phoenix dactylifera	3	gene-LOC103700856, gene-LOC103705233, gene-LOC103707403
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.2023.V1.1, AsparagusV1_07.3002.V1.1
Asteraceae	Flaveria trinervia	3	Ftri18G27418, Ftri1G17656, Ftri9G31125
Brassicaceae	Arabidopsis thaliana	3	AT1G13960.1, AT2G03340.1, AT3G01080.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10004015m.g.v1.0, Thhalv10007428m.g.v1.0 ... Thhalv10020676m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g12320.v2.2, Sp2g14270.v2.2, Sp3g01050.v2.2
Brassicaceae	Brassica nigra	5	BniB02g008880.2N, BniB02g065810.2N, BniB03g005870.2N ... BniB04g008710.2N, BniB06g038850.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G0192
Casuarinaceae	Casuarina glauca	2	Cgl07G0193, Cgl08G0308
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g10920
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g19820, gene.Thate02g36710
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10280, nbisL1-mrna-10777, nbisL1-mrna-2212 ... nbisL1-mrna-5547
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG02.238, evm.TU.LG03.320
Plantaginaceae	Plantago ovata	2	Pov_00023595, Pov_00027062
Plumbaginaceae	Limonium bicolor	3	Lb1G00744, Lb2G13055, Lb2G14533
Poaceae	Echinochloa crus-galli	6	AH01.3253, AH05.3569, BH01.3638, BH05.3583, CH01.3826 ... CH05.3750
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0228830, gene-QOZ80_3BG0274980 ... gene-QOZ80_5AG0391820, gene-QOZ80_5BG0439390
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.4HG0376920.1, HORVU.MOREX.r3.5HG0448590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_002176, gene-QYE76_066242, gene-QYE76_066298
Poaceae	Oryza coarctata	4	Oco05G016530, Oco06G017520, Oco23G007180, Oco24G006780
Poaceae	Oryza sativa	2	LOC_Os03g33012.1, LOC_Os12g32250.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G319000, gene-BS78_08G079900
Poaceae	Puccinellia tenuiflora	1	Pt_Chr0703567
Poaceae	Sporobolus alterniflorus	6	Chr01G023680, Chr04G013660, Chr04G015760, Chr06G016470 ... Chr19G010220, Chr27G006170
Poaceae	Thinopyrum elongatum	2	Tel4E01G303000, Tel5E01G198400
Poaceae	Triticum dicoccoides	4	gene_TRIDC4AG024620, gene_TRIDC4BG025790 ... gene_TRIDC5AG016180, gene_TRIDC5BG018010
Poaceae	Triticum aestivum	6	TraesCS4A02G162500.1, TraesCS4B02G165900.2 ... TraesCS4D02G151700.1, TraesCS5A02G104900.1, TraesCS5B02G108500.1, TraesCS5D02G116100.1
Poaceae	Zea mays	4	Zm00001eb020400_P001, Zm00001eb138040_P001 ... Zm00001eb264780_P001, Zm00001eb393300_P001
Poaceae	Zoysia japonica	3	nbis-gene-30177, nbis-gene-47232, nbis-gene-48631
Poaceae	Zoysia macrostachya	3	Zma_g25102, Zma_g25881, Zma_g3481
Portulacaceae	Portulaca oleracea	5	evm.TU.LG05.1212, evm.TU.LG12.1495, evm.TU.LG13.442 ... evm.TU.LG21.141, evm.TU.LG25.109
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g06620
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_15_RagTag.587, evm.TU.Scaffold_17_RagTag.397 ... evm.TU.Scaffold_6_RagTag.313
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-15172, nbisL1-mrna-2199, nbisL1-mrna-26755
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-10440, nbisL1-mrna-10563, nbisL1-mrna-1281 ... nbisL1-mrna-14786
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14929, nbisL1-mrna-15782, nbisL1-mrna-261 ... nbisL1-mrna-2934
Rhizophoraceae	Kandelia candel	4	evm.TU.utg000001l.297, evm.TU.utg000011l.177 ... evm.TU.utg000013l.281, evm.TU.utg000019l.175
Rhizophoraceae	Kandelia obovata	4	Maker00002158, Maker00002518, Maker00006560, Maker00007416
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-11367, nbisL1-mrna-11781, nbisL1-mrna-12156 ... nbisL1-mrna-7193
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14952, nbisL1-mrna-17308, nbisL1-mrna-18251 ... nbisL1-mrna-23488
Salicaceae	Populus euphratica	5	populus_peu00647, populus_peu06766, populus_peu09331 ... populus_peu20662, populus_peu37407
Solanaceae	Lycium barbarum	4	gene-LOC132616567, gene-LOC132622062, gene-LOC132626076 ... gene-LOC132642012
Solanaceae	Solanum chilense	3	SOLCI000554100, SOLCI005578500, SOLCI007268900
Solanaceae	Solanum pennellii	3	gene-LOC107011365, gene-LOC107014592, gene-LOC107018620
Tamaricaceae	Reaumuria soongarica	3	STRG.29428_chr10_-, STRG.588_chr01_+, gene_13658
Tamaricaceae	Tamarix chinensis	3	TC01G1247, TC01G3019, TC03G0814
Zosteraceae	Zostera marina	1	Zosma06g22370.v3.1