Basic Information
Locus ID:
Lb2G14502
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
transport inhibitor response
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 360647485 | 360653591 | - | Lb2G14502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 66,755.27 Da | 44.09 | 90.73 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 26 | 65 | 7.7E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 85 | 131 | 4.0E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 26 | 65 | 7.7E-20 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 85 | 131 | 4.0E-22 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 48 | 554 | 3.06E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 59 | 2.88E-7 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 59 | 2.88E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 48 | 554 | 3.06E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 592 | 5.0E-170 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 64 | 1.2E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 592 | 5.0E-170 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 64 | 1.2E-18 | - |
| SMART | SM00367 | LRR_CC_2 | 450 | 473 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 2.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 450 | 473 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 499 | 523 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 499 | 523 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 81.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 28 | 69 | 3.4E-4 | IPR001810 |
| SMART | SM00256 | fbox_2 | 28 | 69 | 3.4E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 390 | 414 | 2.6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 39.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 81.0 | IPR006553 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 58 | 8.570165 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 58 | 8.570165 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010686279.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7C9ARE6 | F-box domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology