Basic Information
Locus ID:
Lb2G14462
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 356406168 | 356418905 | + | Lb2G14462 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.57 | 111,861.83 Da | 53.94 | 74.95 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 851 | 950 | 1.4E-7 | IPR003347 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 851 | 950 | 1.4E-7 | IPR003347 |
| Pfam | PF08879 | WRC | 8 | 49 | 4.4E-15 | IPR014977 |
| Pfam | PF08879 | WRC | 8 | 49 | 4.4E-15 | IPR014977 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 857 | 975 | 2.06E-10 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 857 | 975 | 2.06E-10 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 548 | 977 | 9.7E-74 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 548 | 977 | 9.7E-74 | - |
| SMART | SM00558 | cupin_9 | 665 | 968 | 2.1E-26 | IPR003347 |
| SMART | SM00558 | cupin_9 | 665 | 968 | 2.1E-26 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 684 | 968 | 16.602139 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 319 | 8.815781 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 276 | 319 | 8.815781 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 684 | 968 | 16.602139 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 7 | 52 | 20.874889 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 7 | 52 | 20.874889 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 159 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 848 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 159 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21430.1 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase. | 0 |
| RefSeq | XP_021726314.1 | uncharacterized protein LOC110693506 isoform X1 [Chenopodium quinoa] | 0 |
| Q8H1S7 | Lysine-specific demethylase JMJ28 OS=Arabidopsis thaliana OX=3702 GN=JMJ28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RDU2 | WRC domain-containing protein (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_078740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology