Basic Information
Locus ID:
Lb2G14346
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 340940923 | 340944422 | - | Lb2G14346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 31,785.12 Da | 33.88 | 71.39 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 71 | 3.7E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 71 | 3.7E-6 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 82 | 2.04E-10 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 82 | 2.04E-10 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 76 | 4.4E-10 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 76 | 4.4E-10 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 75 | 4.1E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 5 | 75 | 4.1E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 79 | 10.769518 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 79 | 10.769518 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 294 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_002297716.2 | binding partner of ACD11 1 isoform X1 [Populus trichocarpa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A9PE83 | RRM domain-containing protein OS=Populus trichocarpa OX=3694 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology