Basic Information
Locus ID:
Lb2G14222
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 327370589 | 327378699 | - | Lb2G14222 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 80,530.49 Da | 42.05 | 89.26 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 73 | 280 | 8.0681E-128 | - |
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 1.80674E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 73 | 280 | 8.0681E-128 | - |
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 1.80674E-70 | - |
| Pfam | PF00570 | HRDC domain | 607 | 667 | 1.7E-7 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 1.0E-19 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 311 | 407 | 4.7E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 7.8E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 260 | 1.0E-19 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 607 | 667 | 1.7E-7 | IPR002121 |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 7.8E-11 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 311 | 407 | 4.7E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 423 | 1.04E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 423 | 1.04E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 56 | 280 | 1.4E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 56 | 280 | 1.4E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 1.2E-64 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 601 | 669 | 2.9E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 601 | 669 | 2.9E-11 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 581 | 5.6E-22 | IPR036388 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 581 | 5.6E-22 | IPR036388 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 2.0E-25 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 1.4E-26 | IPR014001 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 1.4E-26 | IPR014001 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 2.0E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 508 | 2.1E-162 | IPR004589 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 508 | 2.1E-162 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 598 | 677 | 12.364227 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 19.755676 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 447 | 19.755676 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 24.165316 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 598 | 677 | 12.364227 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 24.165316 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 713 | - | - |
| Coils | Coil | Coil | 18 | 48 | - | - |
| Coils | Coil | Coil | 18 | 48 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021768372.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R7T9 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_097190 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology