Basic Information
Locus ID:
Lb2G14218
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 327255006 | 327257646 | + | Lb2G14218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 40,169.04 Da | 49.80 | 82.99 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 301 | 348 | 1.2E-9 | IPR001452 |
| Pfam | PF14604 | Variant SH3 domain | 301 | 348 | 1.2E-9 | IPR001452 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 42 | 254 | 3.74E-20 | IPR027267 |
| SUPERFAMILY | SSF50044 | SH3-domain | 295 | 351 | 1.02E-14 | IPR036028 |
| SUPERFAMILY | SSF50044 | SH3-domain | 295 | 351 | 1.02E-14 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 42 | 254 | 3.74E-20 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 294 | 354 | 1.1E-14 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 41 | 263 | 1.8E-9 | IPR027267 |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 41 | 263 | 1.8E-9 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 294 | 354 | 1.1E-14 | - |
| SMART | SM00326 | SH3_2 | 297 | 351 | 4.1E-14 | IPR001452 |
| SMART | SM00326 | SH3_2 | 297 | 351 | 4.1E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 294 | 352 | 21.304316 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 294 | 352 | 21.304316 | IPR001452 |
| Coils | Coil | Coil | 189 | 209 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
| Coils | Coil | Coil | 189 | 209 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_034709983.1 | SH3 domain-containing protein 1-like isoform X1 [Vitis riparia] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | D7TFG0 | SH3 domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00190 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology