Basic Information
Locus ID:
Lb2G14216
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 327136705 | 327144751 | - | Lb2G14216 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 115,368.67 Da | 41.20 | 85.81 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 654 | 851 | 7.95618E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 862 | 992 | 8.28487E-58 | - |
| CDD | cd17939 | DEADc_EIF4A | 654 | 851 | 7.95618E-133 | - |
| CDD | cd18787 | SF2_C_DEAD | 862 | 992 | 8.28487E-58 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 875 | 983 | 5.3E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 674 | 835 | 6.6E-39 | IPR011545 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 230 | 359 | 3.0E-17 | IPR000477 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 674 | 835 | 6.6E-39 | IPR011545 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 404 | 469 | 8.4E-10 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 230 | 359 | 3.0E-17 | IPR000477 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 404 | 469 | 8.4E-10 | IPR026960 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 875 | 983 | 5.3E-28 | IPR001650 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 165 | 351 | 3.38E-7 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 718 | 1003 | 6.87E-73 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 718 | 1003 | 6.87E-73 | IPR027417 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 165 | 351 | 3.38E-7 | IPR043502 |
| Gene3D | G3DSA:3.40.50.300 | - | 639 | 857 | 2.6E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 858 | 1022 | 5.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 858 | 1022 | 5.8E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 639 | 857 | 2.6E-66 | IPR027417 |
| SMART | SM00487 | ultradead3 | 668 | 865 | 1.4E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 902 | 983 | 5.8E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 668 | 865 | 1.4E-56 | IPR014001 |
| SMART | SM00490 | helicmild6 | 902 | 983 | 5.8E-31 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 861 | 1022 | 25.327625 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 680 | 850 | 29.295834 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 680 | 850 | 29.295834 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 861 | 1022 | 25.327625 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 649 | 677 | 10.584973 | IPR014014 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 649 | 677 | 10.584973 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 796 | 804 | - | IPR000629 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 796 | 804 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_031102947.1 | eukaryotic initiation factor 4A-11 [Ipomoea triloba] | 0 |
| Q40465 | Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2YA61 | Eukaryotic initiation factor 4A-2 OS=Capsicum annuum OX=4072 GN=T459_31039 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology