Basic Information
Locus ID:
Lb2G14200
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cleavage and polyadenylation specificity factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 326091873 | 326103539 | + | Lb2G14200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 68,926.97 Da | 39.55 | 90.11 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16291 | INTS11-like_MBL-fold | 5 | 203 | 3.07611E-133 | IPR041897 |
| CDD | cd16291 | INTS11-like_MBL-fold | 5 | 203 | 3.07611E-133 | IPR041897 |
| Pfam | PF16661 | Metallo-beta-lactamase superfamily domain | 21 | 192 | 2.9E-18 | IPR001279 |
| Pfam | PF16661 | Metallo-beta-lactamase superfamily domain | 21 | 192 | 2.9E-18 | IPR001279 |
| Pfam | PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain | 346 | 404 | 2.1E-13 | IPR011108 |
| Pfam | PF07521 | Zn-dependent metallo-hydrolase RNA specificity domain | 346 | 404 | 2.1E-13 | IPR011108 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 3 | 414 | 2.03E-118 | IPR036866 |
| SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 3 | 414 | 2.03E-118 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 2 | 268 | 7.6E-81 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 321 | 416 | 1.8E-7 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 2 | 268 | 7.6E-81 | IPR036866 |
| Gene3D | G3DSA:3.60.15.10 | - | 321 | 416 | 1.8E-7 | IPR036866 |
| SMART | SM00849 | Lactamase_B_5a | 15 | 209 | 2.0E-19 | IPR001279 |
| SMART | SM01027 | Beta_Casp_2 | 244 | 346 | 1.2E-5 | IPR022712 |
| SMART | SM01027 | Beta_Casp_2 | 244 | 346 | 1.2E-5 | IPR022712 |
| SMART | SM00849 | Lactamase_B_5a | 15 | 209 | 2.0E-19 | IPR001279 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01730.1 | cleavage and polyadenylation specificity factor 73 kDa subunit-II. a homolog of cleavage and polyadenylation specificity factor that plays an essential role in the development of female gametophyte and embryo | 0 |
| RefSeq | XP_015578956.2 | cleavage and polyadenylation specificity factor subunit 3-II [Ricinus communis] | 0 |
| Q8GUU3 | Cleavage and polyadenylation specificity factor subunit 3-II OS=Arabidopsis thaliana OX=3702 GN=CPSF73-II PE=1 SV=2 | 0 | |
| TrEMBL | A0A5C7HJU8 | Cleavage and polyadenylation specificity factor subunit 3-II OS=Acer yangbiense OX=1000413 GN=EZV62_018368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg9731 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5399 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003441 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39238, Sbi_jg54555 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11091 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00019632, GOSA_00019634 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl15128, Sgl20281, Sgl35697, Sgl35770, Sgl41081 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006204, gene:ENSEOMG00000021036 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0009710, CQ.Regalona.r1.5BG0010130 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30218360, pistato.v30218370 |
| Apiaceae | Apium graveolens | 2 | Ag4G02647, Ag8G01881 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G002150 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706807 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G23988 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G01730.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005303m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g13180.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g009470.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0129 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0135 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g04430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0152s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05150 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1237 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002414 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G14200, Lb2G14217 |
| Poaceae | Echinochloa crus-galli | 4 | AH03.1841, BH03.2077, CH03.2190, CH03.2191 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0534520, gene-QOZ80_6BG0487650 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478980.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004961, gene-QYE76_004980, gene-QYE76_004986 |
| Poaceae | Oryza coarctata | 2 | Oco17G004350, Oco18G004270 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g23380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G176000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0702284, Pt_Chr0702302 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G010500, Chr11G011860 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G339500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG032900, gene_TRIDC5BG034730 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G203800.1, TraesCS5B02G202500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb159740_P004 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30905, nbis-gene-57746 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30275 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG13.1186, evm.TU.LG21.856, evm.TU.LG21.857 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc07g06310 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.248 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26470 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3468 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17567 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.153 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004643 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11570 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2705 |
| Salicaceae | Populus euphratica | 1 | populus_peu21214 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613683 |
| Solanaceae | Solanum chilense | 1 | SOLCI003966400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.17150_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3639 |
| Zosteraceae | Zostera marina | 1 | Zosma01g23270.v3.1 |