Basic Information
Locus ID:
Lb2G14182
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
FIZZY-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 324081241 | 324088981 | + | Lb2G14182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 35,304.38 Da | 33.32 | 77.66 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 292 | 2.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 292 | 2.9E-5 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 99 | 153 | 2.9E-5 | IPR024977 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 99 | 153 | 2.9E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 212 | 6.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 212 | 6.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 302 | 4.76E-47 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 55 | 302 | 4.76E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 221 | 9.3E-69 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 294 | 4.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 222 | 294 | 4.4E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 221 | 9.3E-69 | IPR015943 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 86 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 7.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 169 | 0.082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 0.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 45 | 86 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 6.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 169 | 0.082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 6.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 253 | 292 | 7.4E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 293 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 212 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 293 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 260 | 293 | 14.318126 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 97 | 138 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 212 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 260 | 293 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.117617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 279 | 293 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 279 | 293 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 0 |
| RefSeq | XP_010676588.1 | protein FIZZY-RELATED 2 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9RXT9 | ANAPC4_WD40 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_023120 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology