Basic Information
Locus ID:
Lb2G14104
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 317381702 | 317384482 | + | Lb2G14104 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 32,440.99 Da | 36.72 | 79.02 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14299 | Phloem protein 2 | 118 | 276 | 3.3E-38 | IPR025886 |
| Pfam | PF14299 | Phloem protein 2 | 118 | 276 | 3.3E-38 | IPR025886 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 98 | 3.79E-13 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 98 | 3.79E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 100 | 5.1E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 100 | 5.1E-6 | - |
| SMART | SM00256 | fbox_2 | 25 | 64 | 0.0036 | IPR001810 |
| SMART | SM00256 | fbox_2 | 25 | 64 | 0.0036 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 10.159829 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 10.159829 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12710.1 | phloem protein 2-A12. This gene is predicted to encode a protein with a PP2 domain. This domain in present in lectins found in squash and cucumber, suggesting that this protein could potentially have carbohydrate binding capabilities. | 0 |
| RefSeq | XP_010676545.2 | F-box protein PP2-A12 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9LN77 | F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B6ZTL2 | Putative F-box protein PP2-A12 OS=Davidia involucrata OX=16924 GN=Din_016716 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology