Basic Information
Locus ID:
Lb2G13939
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 304124425 | 304129187 | - | Lb2G13939 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.77 | 89,119.85 Da | 55.45 | 71.75 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 257 | 342 | 4.46294E-30 | - |
| CDD | cd06410 | PB1_UP2 | 257 | 342 | 4.46294E-30 | - |
| Pfam | PF00069 | Protein kinase domain | 639 | 767 | 3.3E-14 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 639 | 767 | 3.3E-14 | IPR000719 |
| Pfam | PF00564 | PB1 domain | 280 | 342 | 1.5E-12 | IPR000270 |
| Pfam | PF00564 | PB1 domain | 280 | 342 | 1.5E-12 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 622 | 791 | 5.26E-33 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 289 | 350 | 4.81E-10 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 622 | 791 | 5.26E-33 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 289 | 350 | 4.81E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 276 | 343 | 9.3E-6 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 724 | 3.8E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 276 | 343 | 9.3E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 725 | 798 | 8.5E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 725 | 798 | 8.5E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 630 | 724 | 3.8E-19 | - |
| SMART | SM00666 | PB1_new | 268 | 344 | 4.7E-14 | IPR000270 |
| SMART | SM00220 | serkin_6 | 638 | 799 | 1.2E-6 | IPR000719 |
| SMART | SM00666 | PB1_new | 268 | 344 | 4.7E-14 | IPR000270 |
| SMART | SM00220 | serkin_6 | 638 | 799 | 1.2E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 638 | 799 | 17.418049 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 638 | 799 | 17.418049 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 754 | 766 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 644 | 669 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 644 | 669 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 754 | 766 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_021767464.1 | uncharacterized protein LOC110731868 [Chenopodium quinoa] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MLL6 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology