Basic Information
Locus ID:
Lb2G13921
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 303141508 | 303143847 | - | Lb2G13921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 37,089.32 Da | 29.48 | 86.95 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 173 | 1.36318E-69 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 173 | 1.36318E-69 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 213 | 341 | 1.07541E-65 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 213 | 341 | 1.07541E-65 | - |
| Pfam | PF00190 | Cupin | 15 | 157 | 9.4E-30 | IPR006045 |
| Pfam | PF00190 | Cupin | 213 | 324 | 2.7E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 213 | 324 | 2.7E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 15 | 157 | 9.4E-30 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 17 | 333 | 2.19E-46 | IPR011051 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 17 | 333 | 2.19E-46 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 195 | 9.4E-36 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 4 | 195 | 9.4E-36 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 207 | 344 | 1.6E-43 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 207 | 344 | 1.6E-43 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 197 | 327 | 1.8E-8 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 2.4E-34 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 197 | 327 | 1.8E-8 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 2.4E-34 | IPR006045 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_040994099.1 | 12S seed storage globulin 1-like [Juglans microcarpa x Juglans regia] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5C6W1 | Cupin type-1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_001270 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology