Basic Information
Locus ID:
Lb2G13622
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBP5
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 283637153 | 283637705 | - | Lb2G13622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 16,023.95 Da | 63.99 | 71.21 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 3 | 111 | 2.4E-32 | IPR001394 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 3 | 111 | 2.4E-32 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 113 | 3.14E-37 | IPR038765 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2 | 113 | 3.14E-37 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 124 | 1.5E-40 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 124 | 1.5E-40 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 114 | 25.869396 | IPR028889 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 114 | 25.869396 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 58 | 75 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 58 | 75 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 141 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_009792032.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like [Nicotiana sylvestris] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8S9IJZ9 | USP domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00005705 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology