halophFGD

Basic Information

Locus ID: Lb2G13464

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	275584502	275592128	+	Lb2G13464

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.20	104,830.91 Da	40.23	97.91	-0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08752	Coatomer gamma subunit appendage platform subdomain	677	823	5.5E-55	IPR013040
Pfam	PF08752	Coatomer gamma subunit appendage platform subdomain	677	823	5.5E-55	IPR013040
Pfam	PF16381	Coatomer subunit gamma-1 C-terminal appendage platform	826	939	1.6E-34	IPR032154
Pfam	PF16381	Coatomer subunit gamma-1 C-terminal appendage platform	826	939	1.6E-34	IPR032154
Pfam	PF01602	Adaptin N terminal region	86	596	1.5E-124	IPR002553
Pfam	PF01602	Adaptin N terminal region	86	596	1.5E-124	IPR002553
SUPERFAMILY	SSF49348	Clathrin adaptor appendage domain	671	827	1.1E-52	IPR013041
SUPERFAMILY	SSF55711	Subdomain of clathrin and coatomer appendage domain	828	939	3.73E-31	IPR009028
SUPERFAMILY	SSF48371	ARM repeat	89	596	6.04E-89	IPR016024
SUPERFAMILY	SSF55711	Subdomain of clathrin and coatomer appendage domain	828	939	3.73E-31	IPR009028
SUPERFAMILY	SSF49348	Clathrin adaptor appendage domain	671	827	1.1E-52	IPR013041
SUPERFAMILY	SSF48371	ARM repeat	89	596	6.04E-89	IPR016024
Gene3D	G3DSA:3.30.310.10	-	825	941	1.9E-35	IPR012295
Gene3D	G3DSA:1.25.10.10	-	79	372	1.4E-105	IPR011989
Gene3D	G3DSA:2.60.40.1480	Coatomer, gamma subunit, appendage domain	670	824	6.1E-55	IPR037067
Gene3D	G3DSA:2.60.40.1480	Coatomer, gamma subunit, appendage domain	670	824	6.1E-55	IPR037067
Gene3D	G3DSA:1.25.10.10	-	79	372	1.4E-105	IPR011989
Gene3D	G3DSA:3.30.310.10	-	825	941	1.9E-35	IPR012295
PIRSF	PIRSF037093	Gamma-COP	63	941	0.0	IPR017106
PIRSF	PIRSF037093	Gamma-COP	63	941	0.0	IPR017106
MobiDBLite	mobidb-lite	consensus disorder prediction	43	62	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	43	62	-	-

Gene Ontology

Biological Process:

GO:0006886 (intracellular protein transport) GO:0016192 (vesicle-mediated transport)

Molecular Function:

GO:0005198 (structural molecule activity)

Cellular Component:

GO:0030117 (membrane coat) GO:0030126 (COPI vesicle coat)

KEGG Pathway

KO Term:

K17267 (coatomer subunit gamma)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34450.1	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative.
RefSeq	XP_003631645.1	PREDICTED: coatomer subunit gamma-2 [Vitis vinifera]
Swiss-Prot	Q6Z382	Coatomer subunit gamma-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0201100 PE=2 SV=1
TrEMBL	D7TQ06	Coatomer subunit gamma OS=Vitis vinifera OX=29760 GN=VIT_03s0063g02450 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg1001, jg28754, jg30297
Aizoaceae	Mesembryanthemum crystallinum	1	gene_26416
Amaranthaceae	Atriplex hortensis	1	Ah010252
Amaranthaceae	Beta vulgaris	1	BVRB_9g217580
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg12456, Sbi_jg45861
Amaranthaceae	Salicornia europaea	1	Seu_jg20218
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022435
Amaranthaceae	Suaeda glauca	6	Sgl37311, Sgl56092, Sgl61425, Sgl61660, Sgl79840, Sgl82290
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000016541, gene:ENSEOMG00000038176 ... gene:ENSEOMG00000051315, gene:ENSEOMG00000051960
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7BG0007780, CQ.Regalona.r1.9AG0016730
Anacardiaceae	Pistacia vera	2	pistato.v30051960, pistato.v30114190
Apiaceae	Apium graveolens	2	Ag7G01219, Ag7G01704
Arecaceae	Cocos nucifera	2	COCNU_14G009530, scaffold027940G000010
Arecaceae	Phoenix dactylifera	2	gene-LOC103702706, gene-LOC103705392
Asparagaceae	Asparagus officinalis	2	AsparagusV1_03.680.V1.1, AsparagusV1_07.3158.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G31995, Ftri4G05415
Brassicaceae	Arabidopsis thaliana	1	AT4G34450.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10022539m.g.v1.0, Thhalv10024368m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g29400.v2.2, Sp7g32250.v2.2
Brassicaceae	Brassica nigra	3	BniB03g020670.2N, BniB03g063500.2N, BniB05g003840.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq09G0089
Casuarinaceae	Casuarina glauca	1	Cgl09G0105
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno01g14040, gene.Cymno09g06880
Dunaliellaceae	Dunaliella salina	1	Dusal.0055s00019.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g32090
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG08.125
Plantaginaceae	Plantago ovata	1	Pov_00007530
Plumbaginaceae	Limonium bicolor	4	Lb2G10390, Lb2G13464, Lb3G17243, Lb6G29904
Poaceae	Echinochloa crus-galli	5	AH03.539, BH03.645, CH01.5033, CH03.735, Contig192.65
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_3AG0239910, gene-QOZ80_3BG0288120 ... gene-QOZ80_7AG0559860, gene-QOZ80_7BG0591240
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0044090.2, HORVU.MOREX.r3.4HG0394090.1
Poaceae	Lolium multiflorum	2	gene-QYE76_042094, gene-QYE76_069572
Poaceae	Oryza coarctata	4	Oco05G007050, Oco06G007280, Oco13G003410, Oco14G003770
Poaceae	Oryza sativa	2	LOC_Os03g12590.1, LOC_Os07g10150.1
Poaceae	Paspalum vaginatum	2	gene-BS78_01G428000, gene-BS78_02G072000
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0101907, Pt_Chr0101934, Pt_Chr0303791
Poaceae	Sporobolus alterniflorus	5	Chr04G000770, Chr07G001130, Chr19G016530, Chr24G003290 ... Chr28G002770
Poaceae	Thinopyrum elongatum	2	Tel1E01G290200, Tel4E01G403500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG024120, gene_TRIDC1BG029220 ... gene_TRIDC4AG009610, gene_TRIDC4BG041140
Poaceae	Triticum aestivum	6	TraesCS1A02G158700.1, TraesCS1B02G174700.1 ... TraesCS1D02G156000.1, TraesCS4A02G077600.1, TraesCS4B02G233700.1, TraesCS4D02G234800.1
Poaceae	Zea mays	3	Zm00001eb009810_P001, Zm00001eb116280_P002 ... Zm00001eb302810_P001
Poaceae	Zoysia japonica	3	nbis-gene-2369, nbis-gene-26699, nbis-gene-35552
Poaceae	Zoysia macrostachya	3	Zma_g1711, Zma_g4888, Zma_g6158
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.378, evm.TU.LG08.1840, evm.TU.LG09.1617 ... evm.TU.LG22.24
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g26390, gene.Posoc04g07650
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.2279, evm.TU.Scaffold_2_RagTag.225
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-4982
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14095
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-3281, nbisL1-mrna-9898
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.818, evm.TU.utg000016l.93
Rhizophoraceae	Kandelia obovata	2	Maker00005271, Maker00016237
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14742, nbisL1-mrna-4651
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-1263, nbisL1-mrna-22419
Salicaceae	Populus euphratica	2	populus_peu08884, populus_peu36465
Solanaceae	Lycium barbarum	1	gene-LOC132599161
Solanaceae	Solanum pennellii	1	gene-LOC107003036
Tamaricaceae	Reaumuria soongarica	2	gene_16832, gene_8727
Tamaricaceae	Tamarix chinensis	2	TC10G0481, TC12G1041
Zosteraceae	Zostera marina	2	Zosma04g03130.v3.1, Zosma06g02520.v3.1