Basic Information
Locus ID:
Lb2G13278
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 267409586 | 267413652 | + | Lb2G13278 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.69 | 17,802.97 Da | 65.54 | 79.67 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 29 | 146 | 3.95201E-56 | IPR000608 |
| CDD | cd00195 | UBCc | 29 | 146 | 3.95201E-56 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 41 | 145 | 4.8E-43 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 41 | 145 | 4.8E-43 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 12 | 151 | 4.72E-51 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 12 | 151 | 4.72E-51 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 12 | 153 | 8.9E-53 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 12 | 153 | 8.9E-53 | IPR016135 |
| SMART | SM00212 | ubc_7 | 3 | 151 | 7.7E-46 | - |
| SMART | SM00212 | ubc_7 | 3 | 151 | 7.7E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 151 | 45.878513 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 151 | 45.878513 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 78 | 93 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 78 | 93 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_013457890.1 | ubiquitin-conjugating enzyme E2 2 isoform X2 [Medicago truncatula] | 0 |
| P25866 | Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum OX=4565 GN=UBC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7YIQ8 | Uncharacterized protein OS=Populus tomentosa OX=118781 GN=POTOM_045325 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology