Basic Information
Locus ID:
Lb2G13133
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Transcription elongation factor B polypeptide
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 262610506 | 262613556 | - | Lb2G13133 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 11,719.99 Da | 44.32 | 86.86 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 4 | 74 | 9.6E-10 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 4 | 74 | 9.6E-10 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 77 | 1.73E-15 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 77 | 1.73E-15 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 91 | 2.0E-18 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 91 | 2.0E-18 | - |
| SMART | SM00213 | ubq_7 | 1 | 73 | 3.2E-8 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 73 | 3.2E-8 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 14.708492 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 77 | 14.708492 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57860.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_043706954.1 | uncharacterized protein LOC122656481 isoform X2 [Telopea speciosissima] | 0 |
| TrEMBL | A0A7C9CSC6 | Ubiquitin-like domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg33104 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_12298, gene_3110 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018194, Ah038376 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15310, Sbi_jg56127 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26606 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020220 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02203, Sgl07358 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011238, gene:ENSEOMG00000029647 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009000, CQ.Regalona.r1.3BG0009530 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30264970 |
| Apiaceae | Apium graveolens | 1 | Ag2G00393 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G014550 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103720445, gene-LOC103722012, gene-LOC120103676 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.3418.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA22378 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G57860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015128m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g19550.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g037210.2N, BniB02p000239.2N, BniB05g037440.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2601 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2750 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g09880 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0635s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g06120 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.367 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00000770, Pov_00000777 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13133, Lb2G13141 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0579510, gene-QOZ80_7BG0610670 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0119180.1 |
| Poaceae | Oryza coarctata | 2 | Oco05G014130, Oco06G012180 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g24920.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G375800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102770, Pt_Chr0102791 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035190, Chr04G011920, Chr07G011240, Chr12G004430 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G289500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG017780, gene_TRIDC2BG021540 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G142700.1, TraesCS2B02G167800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb329210_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g3593, Zma_g5679 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.3105, evm.TU.LG16.481 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g24560 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.179 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13408 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8758 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4909 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1260, evm.TU.utg000033l.117 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015044 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16651, nbisL1-mrna-1934 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14564, nbisL1-mrna-9237 |
| Salicaceae | Populus euphratica | 2 | populus_peu12206, populus_peu14365 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132640026 |
| Solanaceae | Solanum chilense | 1 | SOLCI002425200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020334 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_12712 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G1313 |
| Zosteraceae | Zostera marina | 1 | Zosma04g18140.v3.1 |