Basic Information
Locus ID:
Lb2G13122
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cleavage and polyadenylation specificity factor subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 261924469 | 261928770 | + | Lb2G13122 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.86 | 42,337.24 Da | 44.52 | 89.79 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 326 | 368 | 1.8E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 326 | 368 | 1.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 373 | 1.69E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 315 | 373 | 1.69E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 373 | 3.0E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 373 | 3.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 327 | 367 | 3.5E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 327 | 367 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 368 | 12.54829 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 368 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 173 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_044489789.1 | E3 ubiquitin protein ligase RIE1-like [Mangifera indica] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7N2L7X6 | RING-type domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology