Basic Information
Locus ID:
Lb2G12921
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 255934738 | 255937475 | - | Lb2G12921 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 25,048.79 Da | 43.38 | 103.44 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 164 | 7.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 125 | 164 | 7.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 167 | 5.19E-24 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 167 | 5.19E-24 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 168 | 1.8E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 168 | 1.8E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 80 | 120 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 120 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 164 | 0.022 | IPR001680 |
| SMART | SM00320 | WD40_4 | 123 | 164 | 0.022 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.3 | - | 0 |
| RefSeq | XP_017237119.1 | PREDICTED: autophagy-related protein 18d-like isoform X1 [Daucus carota subsp. sativus] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A8K0N0Q7 | Autophagy-related protein 18c OS=Cocos nucifera OX=13894 GN=COCNU_04G012530 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology