Basic Information
Locus ID:
Lb2G12823
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ClpA ClpB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 253235345 | 253242123 | - | Lb2G12823 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 103,134.01 Da | 45.51 | 92.98 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 611 | 759 | 1.80044E-18 | - |
| CDD | cd00009 | AAA | 611 | 759 | 1.80044E-18 | - |
| CDD | cd00009 | AAA | 277 | 429 | 6.18496E-22 | - |
| CDD | cd00009 | AAA | 277 | 429 | 6.18496E-22 | - |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 108 | 160 | 2.3E-17 | IPR004176 |
| Pfam | PF17871 | AAA lid domain | 437 | 538 | 3.7E-34 | IPR041546 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 184 | 235 | 2.2E-18 | IPR004176 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 636 | 810 | 4.0E-55 | IPR003959 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 636 | 810 | 4.0E-55 | IPR003959 |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 817 | 897 | 5.0E-24 | IPR019489 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 299 | 415 | 3.1E-14 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 184 | 235 | 2.2E-18 | IPR004176 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 299 | 415 | 3.1E-14 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 108 | 160 | 2.3E-17 | IPR004176 |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 817 | 897 | 5.0E-24 | IPR019489 |
| Pfam | PF17871 | AAA lid domain | 437 | 538 | 3.7E-34 | IPR041546 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 586 | 900 | 5.57E-80 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 95 | 237 | 1.02E-31 | IPR036628 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 254 | 526 | 1.4E-76 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 254 | 526 | 1.4E-76 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 586 | 900 | 5.57E-80 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 95 | 237 | 1.02E-31 | IPR036628 |
| Gene3D | G3DSA:3.40.50.300 | - | 589 | 815 | 4.1E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 438 | 588 | 2.1E-32 | - |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 506 | 559 | 7.5E-18 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 247 | 437 | 1.3E-85 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 817 | 918 | 1.8E-26 | - |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 506 | 559 | 7.5E-18 | - |
| Gene3D | G3DSA:1.10.1780.10 | - | 93 | 243 | 6.6E-58 | IPR036628 |
| Gene3D | G3DSA:1.10.8.60 | - | 438 | 588 | 2.1E-32 | - |
| Gene3D | G3DSA:1.10.1780.10 | - | 93 | 243 | 6.6E-58 | IPR036628 |
| Gene3D | G3DSA:3.40.50.300 | - | 589 | 815 | 4.1E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 247 | 437 | 1.3E-85 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 817 | 918 | 1.8E-26 | - |
| SMART | SM00382 | AAA_5 | 294 | 434 | 2.7E-13 | IPR003593 |
| SMART | SM01086 | ClpB_D2_small_2 | 817 | 907 | 8.1E-33 | IPR019489 |
| SMART | SM01086 | ClpB_D2_small_2 | 817 | 907 | 8.1E-33 | IPR019489 |
| SMART | SM00382 | AAA_5 | 637 | 818 | 5.7E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 637 | 818 | 5.7E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 294 | 434 | 2.7E-13 | IPR003593 |
| ProSiteProfiles | PS50151 | UVR domain profile. | 511 | 546 | 11.372122 | IPR001943 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 94 | 236 | 49.96981 | IPR004176 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 94 | 236 | 49.96981 | IPR004176 |
| ProSiteProfiles | PS50151 | UVR domain profile. | 511 | 546 | 11.372122 | IPR001943 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 389 | 401 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 671 | 689 | - | IPR028299 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 671 | 689 | - | IPR028299 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 389 | 401 | - | IPR018368 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 748 | 762 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 641 | 659 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 715 | 733 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 686 | 704 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 748 | 762 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 715 | 733 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 641 | 659 | 1.9E-41 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 686 | 704 | 1.9E-41 | IPR001270 |
| Coils | Coil | Coil | 348 | 368 | - | - |
| Coils | Coil | Coil | 500 | 527 | - | - |
| Coils | Coil | Coil | 348 | 368 | - | - |
| Coils | Coil | Coil | 500 | 527 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50920.1 | CLPC homologue 1. Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. | 0 |
| RefSeq | XP_021716091.1 | ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic [Chenopodium quinoa] | 0 |
| P31542 | ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CD4B PE=3 SV=1 | 0 | |
| TrEMBL | A0A803LCD1 | Chaperone protein ClpC, chloroplastic OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology