halophFGD

Basic Information

Locus ID: Lb2G12772

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Ubiquitin carboxyl-terminal hydrolase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	251698254	251703354	+	Lb2G12772

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.43	66,997.39 Da	37.20	77.34	-0.45

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	474	510	5.9E-11	IPR001394
Pfam	PF00443	Ubiquitin carboxyl-terminal hydrolase	474	510	5.9E-11	IPR001394
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	293	377	7.5E-5	IPR003653
Pfam	PF02902	Ulp1 protease family, C-terminal catalytic domain	293	377	7.5E-5	IPR003653
SUPERFAMILY	SSF54001	Cysteine proteinases	261	382	5.02E-14	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	472	588	2.94E-16	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	261	382	5.02E-14	IPR038765
SUPERFAMILY	SSF54001	Cysteine proteinases	472	588	2.94E-16	IPR038765
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	459	572	5.8E-15	-
Gene3D	G3DSA:3.90.70.10	Cysteine proteinases	459	572	5.8E-15	-
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	227	397	1.5E-11	-
Gene3D	G3DSA:3.40.395.10	Adenoviral Proteinase; Chain A	227	397	1.5E-11	-
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	474	594	10.362342	IPR028889
ProSiteProfiles	PS50235	Ubiquitin specific protease (USP) domain profile.	474	594	10.362342	IPR028889
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	475	490	-	IPR018200
ProSitePatterns	PS00972	Ubiquitin specific protease (USP) domain signature 1.	475	490	-	IPR018200
Coils	Coil	Coil	215	235	-	-
Coils	Coil	Coil	215	235	-	-

Gene Ontology

Biological Process:

GO:0006508 (proteolysis) GO:0006511 (ubiquitin-dependent protein catabolic process) GO:0016579 (protein deubiquitination)

Molecular Function:

GO:0004843 (cysteine-type deubiquitinase activity) GO:0008234 (cysteine-type peptidase activity)

KEGG Pathway

KO Term:

K21343 (ubiquitin carboxyl-terminal hydrolase 15 [EC:3.4.19.12])

Pathway:

ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G40930.1	ubiquitin-specific protease 5. Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.
RefSeq	XP_020535657.1	ubiquitin carboxyl-terminal hydrolase 8 isoform X3 [Jatropha curcas]
Swiss-Prot	O22207	Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana OX=3702 GN=UBP5 PE=1 SV=2
TrEMBL	A0A067KIX9	Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas OX=180498 GN=JCGZ_08731 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl83028, Sgl83243
Asteraceae	Flaveria trinervia	1	Ftri11G21610
Plumbaginaceae	Limonium bicolor	205	Lb0G36902, Lb0G37063, Lb0G37200, Lb0G37615, Lb0G37746 ... Lb1G00016, Lb1G00025, Lb1G00041, Lb1G00216, Lb1G00446, Lb1G00496, Lb1G00537, Lb1G00838, Lb1G00881, Lb1G01217, Lb1G01250, Lb1G01420, Lb1G01727, Lb1G01739, Lb1G01864, Lb1G02109, Lb1G02190, Lb1G02386, Lb1G02665, Lb1G02901, Lb1G04123, Lb1G04369, Lb1G04498, Lb1G04508, Lb1G04544, Lb1G04801, Lb1G04989, Lb1G05062, Lb1G05705, Lb1G06154, Lb1G06343, Lb1G06536, Lb1G07190, Lb1G07606, Lb1G08079, Lb1G08084, Lb2G08488, Lb2G08848, Lb2G09003, Lb2G09148, Lb2G09151, Lb2G09732, Lb2G10130, Lb2G10257, Lb2G10268, Lb2G10796, Lb2G11162, Lb2G11275, Lb2G11363, Lb2G11364, Lb2G11700, Lb2G11973, Lb2G12024, Lb2G12090, Lb2G12144, Lb2G12148, Lb2G12772, Lb2G14019, Lb2G14433, Lb2G14511, Lb2G14738, Lb2G14769, Lb2G14775, Lb2G14777, Lb2G14779, Lb2G14787, Lb2G14822, Lb2G14863, Lb2G15122, Lb3G15887, Lb3G15944, Lb3G16026, Lb3G16136, Lb3G16486, Lb3G16505, Lb3G16933, Lb3G16974, Lb3G18077, Lb3G18799, Lb3G19247, Lb3G19458, Lb3G19924, Lb3G20000, Lb3G20090, Lb3G20112, Lb3G20377, Lb3G21074, Lb3G21407, Lb4G21885, Lb4G22209, Lb4G22210, Lb4G22510, Lb4G23391, Lb4G23834, Lb4G24203, Lb4G24542, Lb4G24623, Lb4G24702, Lb4G25029, Lb4G25228, Lb4G25239, Lb4G25243, Lb4G25342, Lb4G25423, Lb4G25437, Lb4G25535, Lb4G25571, Lb4G26024, Lb4G26130, Lb4G26162, Lb4G26268, Lb4G26311, Lb4G26371, Lb5G26430, Lb5G26481, Lb5G26498, Lb5G26520, Lb5G26533, Lb5G26534, Lb5G26570, Lb5G26588, Lb5G26681, Lb5G26742, Lb5G26986, Lb5G26989, Lb5G27035, Lb5G27103, Lb5G27152, Lb5G27158, Lb5G27187, Lb5G27188, Lb5G27190, Lb5G27320, Lb5G27668, Lb5G28081, Lb5G28149, Lb5G28249, Lb5G28756, Lb5G28862, Lb5G29295, Lb5G29470, Lb5G29520, Lb5G29610, Lb6G29651, Lb6G30138, Lb6G30357, Lb6G30358, Lb6G30382, Lb6G30561, Lb6G30663, Lb6G30781, Lb6G30811, Lb6G30830, Lb6G30840, Lb6G30846, Lb6G30864, Lb6G30937, Lb6G31137, Lb6G31222, Lb6G31418, Lb6G31748, Lb6G31849, Lb6G32045, Lb6G32399, Lb6G32595, Lb7G32703, Lb7G32755, Lb7G32868, Lb7G33086, Lb7G33313, Lb7G33361, Lb7G33383, Lb7G33437, Lb7G33438, Lb7G33475, Lb7G33577, Lb7G33692, Lb7G33720, Lb7G34424, Lb7G34589, Lb7G34667, Lb7G34684, Lb7G34766, Lb7G34767, Lb7G34778, Lb7G34790, Lb7G35224, Lb7G35252, Lb7G35388, Lb7G35405, Lb7G35411, Lb7G35542, Lb7G35545, Lb8G35638, Lb8G35639, Lb8G35768, Lb8G35859, Lb8G35969, Lb8G36442, Lb8G36575
Poaceae	Lolium multiflorum	4	gene-QYE76_040894, gene-QYE76_049498, gene-QYE76_050588 ... gene-QYE76_070047