Basic Information
Locus ID:
Lb2G12756
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 251204996 | 251210186 | + | Lb2G12756 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 27,491.29 Da | 59.19 | 66.25 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 149 | 228 | 3.50758E-32 | - |
| CDD | cd12420 | RRM_RBPMS_like | 149 | 228 | 3.50758E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 220 | 1.0E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 220 | 1.0E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 105 | 220 | 7.39E-15 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 105 | 220 | 7.39E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 233 | 2.1E-18 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 233 | 2.1E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 148 | 224 | 3.2E-8 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 148 | 224 | 3.2E-8 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 233 | 11.69051 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 233 | 11.69051 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.2 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_011100421.1 | RNA-binding protein 1-like isoform X1 [Sesamum indicum] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UJ89 | RNA-binding protein 1-like isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105178580 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology