Basic Information
Locus ID:
Lb2G12694
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 249145152 | 249156667 | + | Lb2G12694 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 129,545.80 Da | 39.95 | 93.31 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12087 | TM_EGFR-like | 760 | 794 | 0.00700713 | - |
| CDD | cd12087 | TM_EGFR-like | 760 | 794 | 0.00700713 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 565 | 604 | 7.5E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 829 | 1101 | 2.2E-43 | IPR000719 |
| Pfam | PF00560 | Leucine Rich Repeat | 681 | 701 | 0.29 | IPR001611 |
| Pfam | PF13041 | PPR repeat family | 166 | 214 | 1.2E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 304 | 327 | 1.0 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 110 | 135 | 0.0012 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 243 | 265 | 0.025 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 274 | 302 | 1.1E-4 | IPR002885 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 565 | 604 | 7.5E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 829 | 1101 | 2.2E-43 | IPR000719 |
| Pfam | PF01535 | PPR repeat | 243 | 265 | 0.025 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 274 | 302 | 1.1E-4 | IPR002885 |
| Pfam | PF00560 | Leucine Rich Repeat | 681 | 701 | 0.29 | IPR001611 |
| Pfam | PF13041 | PPR repeat family | 166 | 214 | 1.2E-9 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 110 | 135 | 0.0012 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 304 | 327 | 1.0 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 809 | 1104 | 2.73E-73 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 809 | 1104 | 2.73E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 567 | 740 | 8.84E-35 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 567 | 740 | 8.84E-35 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 564 | 749 | 3.4E-51 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 52 | 165 | 4.9E-22 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 906 | 1123 | 1.2E-61 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 228 | 306 | 1.2E-14 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 798 | 905 | 6.8E-35 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 307 | 415 | 1.3E-5 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 166 | 227 | 3.2E-10 | IPR011990 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 564 | 749 | 3.4E-51 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 906 | 1123 | 1.2E-61 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 228 | 306 | 1.2E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 166 | 227 | 3.2E-10 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 798 | 905 | 6.8E-35 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 52 | 165 | 4.9E-22 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 307 | 415 | 1.3E-5 | IPR011990 |
| SMART | SM00220 | serkin_6 | 829 | 1103 | 2.9E-27 | IPR000719 |
| SMART | SM00220 | serkin_6 | 829 | 1103 | 2.9E-27 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 139 | 167 | 7.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 110 | 137 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 274 | 303 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 110 | 137 | 0.0013 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 169 | 198 | 3.9E-8 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 139 | 167 | 7.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 274 | 303 | 2.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 169 | 198 | 3.9E-8 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | 9.404853 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 829 | 1108 | 34.392982 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 167 | 201 | 11.180584 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 167 | 201 | 11.180584 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | 9.404853 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 829 | 1108 | 34.392982 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 105 | 139 | 10.117337 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 105 | 139 | 10.117337 | IPR002885 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 952 | 964 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 835 | 857 | - | IPR017441 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 835 | 857 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 952 | 964 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10290.1 | leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_025691129.1 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Arachis hypogaea] | 0 |
| Q6K4T4 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6P4CWV9 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arachis duranensis OX=130453 GN=LOC107481807 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg17036, jg30907, jg31113, jg39516 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_10288, gene_16474 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah005424, Ah027343 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g078930, BVRB_6g134990 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg12725, Sbi_jg53174, Sbi_jg62334 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg8712, Seu_jg904 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007323, GOSA_00010299 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24027, Sgl29209, Sgl33829, Sgl39193 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000001653, gene:ENSEOMG00000002870 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0003030, CQ.Regalona.r1.4AG0005440 ... |
| Anacardiaceae | Pistacia vera | 4 | pistato.v30064310, pistato.v30202220, pistato.v30258830 ... |
| Apiaceae | Apium graveolens | 2 | Ag7G01451, Ag7G02178 |
| Arecaceae | Cocos nucifera | 4 | COCNU_03G007270, COCNU_05G005790, COCNU_05G005800 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701542, gene-LOC103707936, gene-SERK3 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.244.V1.1, AsparagusV1_07.2588.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G27876, Ftri1G04640 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT5G10290.1, AT5G63710.1, AT5G65240.2 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10003847m.g.v1.0, Thhalv10003898m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g26810.v2.2, Sp2g28340.v2.2, Sp6g33140.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB05g026750.2N, BniB06g012010.2N, BniB06g013550.2N |
| Casuarinaceae | Casuarina equisetifolia | 6 | Ceq05G1694, Ceq05G2315, Ceq05G2320, Ceq05G2333, Ceq06G1400 ... |
| Casuarinaceae | Casuarina glauca | 5 | Cgl05G2435, Cgl05G2448, Cgl05G2483, Cgl06G1463, Cgl06G2028 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g02630 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g06000, gene.Thate05g11220 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10216, nbisL1-mrna-10626 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.646, evm.TU.LG02.918 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020976, Pov_00029082 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G07237, Lb2G12694, Lb2G13767 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.915, AH07.1246, BH01.1046, BH07.1336, CH07.1053 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0109510, gene-QOZ80_2BG0163040 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0291050.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022252, gene-QYE76_062777 |
| Poaceae | Oryza coarctata | 3 | Oco03G007770, Oco05G021160, Oco06G022020 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g18320.1, LOC_Os03g49620.3 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G111700, gene-BS78_04G122100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0104798, Pt_Chr0201917 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr04G026580, Chr06G031330, Chr07G025580, Chr09G000500 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G488700, Tel4E01G075700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG044420, gene_TRIDC3BG050320 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G302200.1, TraesCS3B02G334400.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb054260_P003, Zm00001eb237190_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50983 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12587, Zma_g683 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG05.636, evm.TU.LG05.637, evm.TU.LG08.1220 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29570 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.1076, evm.TU.Scaffold_6_RagTag.1399 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16354, nbisL1-mrna-919 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-17697, nbisL1-mrna-8432 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-1202, nbisL1-mrna-2335 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000011l.890, evm.TU.utg000019l.600 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00001784, Maker00008277 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-13410, nbisL1-mrna-6118 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1766, nbisL1-mrna-3872 |
| Salicaceae | Populus euphratica | 5 | populus_peu01477, populus_peu01498, populus_peu13758 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132612627, gene-LOC132637631, gene-LOC132639989 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI001671300, SOLCI003744500, SOLCI004458900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004712, gene-LOC107015150, gene-LOC107020602 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.16587_chr06_+, STRG.982_chr01_+, gene_12937 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G1563, TC05G2157, TC09G0033 |
| Zosteraceae | Zostera marina | 1 | Zosma06g16940.v3.1 |