Basic Information
Locus ID:
Lb2G12478
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
F-box FBD LRR-repeat protein At4g03220
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 243468928 | 243472474 | + | Lb2G12478 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 51,790.74 Da | 54.40 | 102.00 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 376 | 413 | 1.3E-8 | IPR006566 |
| Pfam | PF08387 | FBD | 376 | 413 | 1.3E-8 | IPR006566 |
| SUPERFAMILY | SSF52047 | RNI-like | 58 | 235 | 2.82E-7 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 58 | 235 | 2.82E-7 | - |
| SMART | SM00579 | 9598neu4hmm | 374 | 448 | 1.1E-6 | IPR006566 |
| SMART | SM00579 | 9598neu4hmm | 374 | 448 | 1.1E-6 | IPR006566 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03220.1 | Protein with RNI-like/FBD-like domains. | 0 |
| RefSeq | XP_006447441.1 | putative F-box/FBD/LRR-repeat protein At4g03220 [Citrus clementina] | 0 |
| Q9ZR09 | Putative F-box/FBD/LRR-repeat protein At4g03220 OS=Arabidopsis thaliana OX=3702 GN=At4g03220 PE=4 SV=1 | 0 | |
| TrEMBL | A0A5B7BEP8 | Putative RNI-like/FBD-like domains (Fragment) OS=Davidia involucrata OX=16924 GN=Din_036516 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18961 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20988 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30018990 |
| Apiaceae | Apium graveolens | 1 | Ag3G00232 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463499 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G11991, Ftri13G21589 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G03220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009938m.g.v1.0, Thhalv10029130m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g03260.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g055710.2N, BniB08g038980.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2490 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2585 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1992 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010082, Pov_00037775 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G12478 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.763, evm.TU.LG20.1138 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g02340, gene.Posoc10g02360 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1321 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20846 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8750 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21298 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.811 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1244 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4759 |
| Salicaceae | Populus euphratica | 2 | populus_peu02891, populus_peu16959 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132619043 |
| Solanaceae | Solanum chilense | 1 | SOLCI002847700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107025251 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14682 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2252 |