Basic Information
Locus ID:
Lb2G12466
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ClpA ClpB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 242720780 | 242726334 | - | Lb2G12466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.96 | 101,993.36 Da | 40.10 | 93.85 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 288 | 448 | 4.10994E-25 | - |
| CDD | cd00009 | AAA | 682 | 830 | 4.32729E-18 | - |
| CDD | cd00009 | AAA | 288 | 448 | 4.10994E-25 | - |
| CDD | cd00009 | AAA | 682 | 830 | 4.32729E-18 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 311 | 443 | 3.7E-13 | IPR003959 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 707 | 876 | 5.1E-54 | IPR003959 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 311 | 443 | 3.7E-13 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 201 | 252 | 9.1E-11 | IPR004176 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 201 | 252 | 9.1E-11 | IPR004176 |
| Pfam | PF17871 | AAA lid domain | 450 | 551 | 7.2E-34 | IPR041546 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 707 | 876 | 5.1E-54 | IPR003959 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 126 | 175 | 3.9E-11 | IPR004176 |
| Pfam | PF17871 | AAA lid domain | 450 | 551 | 7.2E-34 | IPR041546 |
| Pfam | PF02861 | Clp amino terminal domain, pathogenicity island component | 126 | 175 | 3.9E-11 | IPR004176 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 112 | 263 | 2.06E-37 | IPR036628 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 266 | 656 | 3.08E-100 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 266 | 656 | 3.08E-100 | IPR027417 |
| SUPERFAMILY | SSF81923 | Double Clp-N motif | 112 | 263 | 2.06E-37 | IPR036628 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 657 | 905 | 9.74E-69 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 657 | 905 | 9.74E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 256 | 449 | 3.0E-82 | IPR027417 |
| Gene3D | G3DSA:1.10.1780.10 | - | 108 | 255 | 4.4E-34 | IPR036628 |
| Gene3D | G3DSA:3.40.50.300 | - | 450 | 655 | 1.9E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 660 | 881 | 5.0E-88 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 256 | 449 | 3.0E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 450 | 655 | 1.9E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 660 | 881 | 5.0E-88 | IPR027417 |
| Gene3D | G3DSA:1.10.1780.10 | - | 108 | 255 | 4.4E-34 | IPR036628 |
| SMART | SM00382 | AAA_5 | 708 | 865 | 2.2E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 305 | 449 | 1.2E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 305 | 449 | 1.2E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 708 | 865 | 2.2E-9 | IPR003593 |
| TIGRFAM | TIGR03346 | chaperone_ClpB: ATP-dependent chaperone protein ClpB | 113 | 907 | 0.0 | IPR017730 |
| TIGRFAM | TIGR03346 | chaperone_ClpB: ATP-dependent chaperone protein ClpB | 113 | 907 | 0.0 | IPR017730 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 110 | 253 | 44.172058 | IPR004176 |
| ProSiteProfiles | PS51903 | Clp repeat (R) domain profile. | 110 | 253 | 44.172058 | IPR004176 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 401 | 413 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 742 | 760 | - | IPR028299 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 742 | 760 | - | IPR028299 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 401 | 413 | - | IPR018368 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 786 | 804 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 786 | 804 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 712 | 730 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 757 | 775 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 712 | 730 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 819 | 833 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 819 | 833 | 4.0E-39 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 757 | 775 | 4.0E-39 | IPR001270 |
| Coils | Coil | Coil | 579 | 599 | - | - |
| Coils | Coil | Coil | 519 | 539 | - | - |
| Coils | Coil | Coil | 613 | 640 | - | - |
| Coils | Coil | Coil | 541 | 568 | - | - |
| Coils | Coil | Coil | 519 | 539 | - | - |
| Coils | Coil | Coil | 613 | 640 | - | - |
| Coils | Coil | Coil | 541 | 568 | - | - |
| Coils | Coil | Coil | 579 | 599 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25140.1 | casein lytic proteinase B4. Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress. | 0 |
| RefSeq | XP_010665999.1 | chaperone protein ClpB4, mitochondrial [Beta vulgaris subsp. vulgaris] | 0 |
| Q0E3C8 | Chaperone protein ClpB3, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=CLPB3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9QSC4 | Clp R domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_147290 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology