Basic Information
Locus ID:
Lb2G12463
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 242575701 | 242577945 | + | Lb2G12463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 28,049.06 Da | 29.80 | 92.22 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 159 | 208 | 1.2E-5 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 1.5E-10 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 159 | 208 | 1.2E-5 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 136 | 1.5E-10 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 9 | 214 | 2.09E-72 | IPR012337 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 9 | 214 | 2.09E-72 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 225 | 8.4E-82 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 225 | 8.4E-82 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_010665982.1 | probable CCR4-associated factor 1 homolog 7 [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C9DAD4 | poly(A)-specific ribonuclease OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology