Basic Information
Locus ID:
Lb2G12385
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
AFC1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 240387222 | 240389584 | - | Lb2G12385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 37,837.36 Da | 41.37 | 95.08 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14134 | PKc_CLK | 1 | 325 | 1.00162E-172 | - |
| CDD | cd14134 | PKc_CLK | 1 | 325 | 1.00162E-172 | - |
| Pfam | PF00069 | Protein kinase domain | 1 | 325 | 1.7E-42 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 1 | 325 | 1.7E-42 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 327 | 6.5E-68 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 327 | 6.5E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 76 | 7.5E-93 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 325 | 7.5E-93 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 76 | 7.5E-93 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 325 | 7.5E-93 | - |
| SMART | SM00220 | serkin_6 | 2 | 325 | 1.1E-58 | IPR000719 |
| SMART | SM00220 | serkin_6 | 2 | 325 | 1.1E-58 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 325 | 35.24102 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 325 | 35.24102 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 117 | 129 | - | IPR008271 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 117 | 129 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G53570.3 | FUS3-complementing gene 1. a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast. | 0 |
| RefSeq | XP_034693847.1 | serine/threonine-protein kinase AFC1 isoform X3 [Vitis riparia] | 0 |
| P51566 | Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana OX=3702 GN=AFC1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1U7ZW66 | serine/threonine-protein kinase AFC1 OS=Nelumbo nucifera OX=4432 GN=LOC104594639 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology