Basic Information
Locus ID:
Lb2G12384
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 240133611 | 240136827 | - | Lb2G12384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 102,098.97 Da | 54.41 | 66.68 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 404 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 527 | 563 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 521 | 9.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 372 | 404 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 603 | 0.082 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 579 | 603 | 0.082 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 527 | 563 | 0.0057 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 484 | 521 | 9.0E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 367 | 711 | 5.13E-58 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 367 | 711 | 5.13E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 441 | 1.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 217 | 441 | 1.2E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 733 | 2.9E-51 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 476 | 733 | 2.9E-51 | IPR015943 |
| SMART | SM00320 | WD40_4 | 655 | 696 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 521 | 2.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 5.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 654 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 565 | 604 | 0.15 | IPR001680 |
| SMART | SM00320 | WD40_4 | 609 | 654 | 0.83 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 7.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 655 | 696 | 0.47 | IPR001680 |
| SMART | SM00320 | WD40_4 | 482 | 521 | 2.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 366 | 405 | 7.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 524 | 563 | 5.9E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 530 | 564 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 530 | 564 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 373 | 407 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 489 | 524 | 12.103769 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 489 | 524 | 12.103769 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 373 | 414 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 489 | 530 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 530 | 564 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 489 | 530 | 15.420926 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 373 | 407 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 373 | 414 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 530 | 564 | 10.574686 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 392 | 406 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 508 | 522 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 392 | 406 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 508 | 522 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 508 | 522 | 5.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 508 | 522 | 5.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 550 | 564 | 5.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 392 | 406 | 5.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 550 | 564 | 5.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 392 | 406 | 5.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 815 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 867 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 61 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 754 | 787 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021854625.1 | uncharacterized protein LOC110793990 [Spinacia oleracea] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N0ZY53 | WD repeat-containing protein 44-like OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology