Basic Information
Locus ID:
Lb2G12370
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 238062230 | 238066927 | - | Lb2G12370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 50,871.82 Da | 32.33 | 67.16 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 347 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 347 | 1.2E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 427 | 3.17E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 198 | 427 | 3.17E-32 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 441 | 4.4E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 190 | 441 | 4.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 305 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 347 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 390 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 267 | 305 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 356 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 315 | 356 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 350 | 10.179234 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 315 | 350 | 10.179234 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 58 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_028052334.1 | uncharacterized WD repeat-containing protein C2A9.03-like [Camellia sinensis] | 0 |
| Q9Y7K5 | Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.03 PE=4 SV=2 | 0 | |
| TrEMBL | A0A4S4EYW3 | WD_REPEATS_REGION domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_009426 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology