Basic Information
Locus ID:
Lb2G12361
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 237517951 | 237520186 | - | Lb2G12361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 30,964.24 Da | 24.46 | 86.70 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 84 | 1.8E-4 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 18 | 84 | 1.8E-4 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 16 | 97 | 2.17E-9 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 16 | 97 | 2.17E-9 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 15 | 122 | 1.9E-8 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 15 | 122 | 1.9E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 17 | 92 | 0.0023 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 17 | 92 | 0.0023 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 96 | 10.189634 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 16 | 96 | 10.189634 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_031248798.1 | binding partner of ACD11 1-like isoform X2 [Pistacia vera] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6M8G7 | RRM domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_020459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology