Basic Information
Locus ID:
Lb2G12329
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 236411413 | 236416954 | + | Lb2G12329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 42,194.58 Da | 30.12 | 88.21 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 160 | 239 | 1.8E-9 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 355 | 0.23 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 160 | 239 | 1.8E-9 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 355 | 0.23 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 54 | 355 | 7.85E-35 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 54 | 355 | 7.85E-35 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 362 | 7.4E-67 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 47 | 362 | 7.4E-67 | IPR015943 |
| SMART | SM00320 | WD40_4 | 185 | 223 | 0.057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 357 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 314 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 181 | 0.047 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 223 | 0.057 | IPR001680 |
| SMART | SM00320 | WD40_4 | 275 | 314 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 357 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 143 | 181 | 0.047 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 232 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 196 | 232 | 9.97376 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 46 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_034690579.1 | SEC12-like protein 2 [Vitis riparia] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5B6ZCT2 | Putative SEC12-like protein 2 OS=Davidia involucrata OX=16924 GN=Din_011186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology