Basic Information
Locus ID:
Lb2G12294
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 234544226 | 234546382 | - | Lb2G12294 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 45,209.82 Da | 46.58 | 72.68 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 321 | 0.24 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 164 | 205 | 4.5E-5 | IPR024977 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 164 | 205 | 4.5E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 274 | 3.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 321 | 0.24 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 239 | 274 | 3.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 367 | 8.96E-40 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 128 | 367 | 8.96E-40 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 370 | 1.7E-91 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 370 | 1.7E-91 | IPR015943 |
| SMART | SM00320 | WD40_4 | 283 | 325 | 0.28 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 152 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 157 | 196 | 2.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 111 | 152 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 235 | 274 | 3.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 325 | 0.28 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 13.750016 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 274 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 164 | 205 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 242 | 274 | 11.022865 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 196 | 8.702878 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 164 | 196 | 8.702878 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 242 | 283 | 13.750016 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology