Basic Information
Locus ID:
Lb2G12208
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 226424268 | 226426224 | - | Lb2G12208 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 48,984.61 Da | 53.19 | 92.82 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 239 | 282 | 2.4111E-21 | - |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 239 | 282 | 2.4111E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 39 | 172 | 4.18139E-47 | IPR044744 |
| CDD | cd02123 | PA_C_RZF_like | 39 | 172 | 4.18139E-47 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 239 | 282 | 6.8E-10 | IPR001841 |
| Pfam | PF02225 | PA domain | 90 | 151 | 1.6E-9 | IPR003137 |
| Pfam | PF02225 | PA domain | 90 | 151 | 1.6E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 239 | 282 | 6.8E-10 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 90 | 139 | 1.83E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 290 | 8.16E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 290 | 8.16E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 90 | 139 | 1.83E-7 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 28 | 162 | 3.0E-26 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 28 | 162 | 3.0E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 287 | 1.8E-18 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 201 | 287 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 240 | 281 | 2.9E-8 | IPR001841 |
| SMART | SM00184 | ring_2 | 240 | 281 | 2.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 282 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 282 | 11.928664 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_042988905.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2 isoform X2 [Carya illinoinensis] | 0 |
| Q8VZ14 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=RMR2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ATK9 | RING-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology