Basic Information
Locus ID:
Lb2G12182
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 225265915 | 225266919 | - | Lb2G12182 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 31,229.82 Da | 58.96 | 77.29 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 46 | 101 | 5.72151E-24 | - |
| CDD | cd16745 | RING-HC_AtRMA_like | 46 | 101 | 5.72151E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 48 | 99 | 2.0E-8 | IPR018957 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 48 | 99 | 2.0E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 112 | 7.69E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 112 | 7.69E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 113 | 6.7E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 113 | 6.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 48 | 99 | 7.0E-10 | IPR001841 |
| SMART | SM00184 | ring_2 | 48 | 99 | 7.0E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 100 | 12.25323 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 100 | 12.25323 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 63 | 72 | - | IPR017907 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 63 | 72 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_039017388.1 | E3 ubiquitin-protein ligase RMA3-like [Hibiscus syriacus] | 0 |
| O64425 | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A3CT79 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002655pilonHSYRG00035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology