HalophFGD

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Basic Information
Locus ID: Lb2G12153
Species & Taxonomic ID: Limonium bicolor & 293754
Genome Assembly: GCA_023374045.1
Description: Transposase family tnp2
Maps and Mapping Data
Chromosome Start End Strand ID
chr02 223592522 223593771 + Lb2G12153
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.57 34,916.57 Da 38.21 89.18 -0.53
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF03004 Plant transposase (Ptta/En/Spm family) 154 274 4.3E-17 IPR004252
Pfam PF03004 Plant transposase (Ptta/En/Spm family) 154 274 4.3E-17 IPR004252
Coils Coil Coil 141 161 - -
Coils Coil Coil 141 161 - -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021972036.1 uncharacterized protein LOC110867216 [Helianthus annuus] 0
TrEMBL A0A1R3IW16 Transposase, Ptta/En/Spm, plant OS=Corchorus capsularis OX=210143 GN=CCACVL1_09459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Plantaginaceae Plantago ovata 1 Pov_00029966
Plumbaginaceae Limonium bicolor 80 Lb0G36886, Lb0G36887, Lb0G37772, Lb0G38155, Lb0G38193 ...
Lb0G38347, Lb1G00948, Lb1G01147, Lb1G01591, Lb1G02625, Lb1G02820, Lb1G02852, Lb1G04343, Lb1G04639, Lb1G05087, Lb1G05597, Lb1G05963, Lb1G06535, Lb1G07279, Lb1G07281, Lb1G07990, Lb1G08043, Lb2G09223, Lb2G09468, Lb2G09844, Lb2G09848, Lb2G11693, Lb2G12153, Lb2G13242, Lb2G13325, Lb2G14500, Lb2G14591, Lb2G14761, Lb2G15067, Lb3G15627, Lb3G15827, Lb3G15894, Lb3G15899, Lb3G15900, Lb3G16217, Lb3G17174, Lb3G17349, Lb3G17676, Lb3G18214, Lb3G19096, Lb3G19232, Lb3G19600, Lb3G20294, Lb3G20487, Lb3G20488, Lb3G20490, Lb4G22660, Lb4G22735, Lb4G23163, Lb4G23298, Lb4G24426, Lb4G25227, Lb4G25897, Lb4G26010, Lb4G26063, Lb4G26366, Lb5G26727, Lb5G28015, Lb5G29538, Lb6G29862, Lb6G30293, Lb6G30330, Lb6G30593, Lb6G31279, Lb6G32079, Lb7G32807, Lb7G33414, Lb7G33483, Lb7G33604, Lb7G34482, Lb7G34630, Lb7G35316, Lb8G35799, Lb8G35833, Lb8G36218
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.