halophFGD

Basic Information

Locus ID: Lb2G12024

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Protein LOW PSII ACCUMULATION 3

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	215510164	215525574	-	Lb2G12024

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.58	174,520.16 Da	43.80	73.66	-0.64

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF09353	Domain of unknown function (DUF1995)	1285	1527	1.5E-46	IPR018962
Pfam	PF02992	Transposase family tnp2	304	379	4.6E-30	IPR004242
Pfam	PF02992	Transposase family tnp2	304	379	4.6E-30	IPR004242
Pfam	PF13963	Transposase-associated domain	3	77	1.3E-14	IPR029480
Pfam	PF13952	Domain of unknown function (DUF4216)	590	658	3.2E-13	IPR025312
Pfam	PF09353	Domain of unknown function (DUF1995)	1285	1527	1.5E-46	IPR018962
Pfam	PF13952	Domain of unknown function (DUF4216)	590	658	3.2E-13	IPR025312
Pfam	PF13963	Transposase-associated domain	3	77	1.3E-14	IPR029480
MobiDBLite	mobidb-lite	consensus disorder prediction	722	795	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	666	693	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1084	1109	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	666	693	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	117	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1084	1109	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	722	795	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	86	117	-	-
Coils	Coil	Coil	1055	1075	-	-
Coils	Coil	Coil	1055	1075	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G48790.1	Domain of unknown function (DUF1995).
RefSeq	XP_019159509.1	PREDICTED: uncharacterized protein LOC109156123 [Ipomoea nil]
TrEMBL	D7U3R3	DUF1995 domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0033g00230 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl83028, Sgl83243
Asteraceae	Flaveria trinervia	1	Ftri11G21610
Plumbaginaceae	Limonium bicolor	205	Lb0G36902, Lb0G37063, Lb0G37200, Lb0G37615, Lb0G37746 ... Lb1G00016, Lb1G00025, Lb1G00041, Lb1G00216, Lb1G00446, Lb1G00496, Lb1G00537, Lb1G00838, Lb1G00881, Lb1G01217, Lb1G01250, Lb1G01420, Lb1G01727, Lb1G01739, Lb1G01864, Lb1G02109, Lb1G02190, Lb1G02386, Lb1G02665, Lb1G02901, Lb1G04123, Lb1G04369, Lb1G04498, Lb1G04508, Lb1G04544, Lb1G04801, Lb1G04989, Lb1G05062, Lb1G05705, Lb1G06154, Lb1G06343, Lb1G06536, Lb1G07190, Lb1G07606, Lb1G08079, Lb1G08084, Lb2G08488, Lb2G08848, Lb2G09003, Lb2G09148, Lb2G09151, Lb2G09732, Lb2G10130, Lb2G10257, Lb2G10268, Lb2G10796, Lb2G11162, Lb2G11275, Lb2G11363, Lb2G11364, Lb2G11700, Lb2G11973, Lb2G12024, Lb2G12090, Lb2G12144, Lb2G12148, Lb2G12772, Lb2G14019, Lb2G14433, Lb2G14511, Lb2G14738, Lb2G14769, Lb2G14775, Lb2G14777, Lb2G14779, Lb2G14787, Lb2G14822, Lb2G14863, Lb2G15122, Lb3G15887, Lb3G15944, Lb3G16026, Lb3G16136, Lb3G16486, Lb3G16505, Lb3G16933, Lb3G16974, Lb3G18077, Lb3G18799, Lb3G19247, Lb3G19458, Lb3G19924, Lb3G20000, Lb3G20090, Lb3G20112, Lb3G20377, Lb3G21074, Lb3G21407, Lb4G21885, Lb4G22209, Lb4G22210, Lb4G22510, Lb4G23391, Lb4G23834, Lb4G24203, Lb4G24542, Lb4G24623, Lb4G24702, Lb4G25029, Lb4G25228, Lb4G25239, Lb4G25243, Lb4G25342, Lb4G25423, Lb4G25437, Lb4G25535, Lb4G25571, Lb4G26024, Lb4G26130, Lb4G26162, Lb4G26268, Lb4G26311, Lb4G26371, Lb5G26430, Lb5G26481, Lb5G26498, Lb5G26520, Lb5G26533, Lb5G26534, Lb5G26570, Lb5G26588, Lb5G26681, Lb5G26742, Lb5G26986, Lb5G26989, Lb5G27035, Lb5G27103, Lb5G27152, Lb5G27158, Lb5G27187, Lb5G27188, Lb5G27190, Lb5G27320, Lb5G27668, Lb5G28081, Lb5G28149, Lb5G28249, Lb5G28756, Lb5G28862, Lb5G29295, Lb5G29470, Lb5G29520, Lb5G29610, Lb6G29651, Lb6G30138, Lb6G30357, Lb6G30358, Lb6G30382, Lb6G30561, Lb6G30663, Lb6G30781, Lb6G30811, Lb6G30830, Lb6G30840, Lb6G30846, Lb6G30864, Lb6G30937, Lb6G31137, Lb6G31222, Lb6G31418, Lb6G31748, Lb6G31849, Lb6G32045, Lb6G32399, Lb6G32595, Lb7G32703, Lb7G32755, Lb7G32868, Lb7G33086, Lb7G33313, Lb7G33361, Lb7G33383, Lb7G33437, Lb7G33438, Lb7G33475, Lb7G33577, Lb7G33692, Lb7G33720, Lb7G34424, Lb7G34589, Lb7G34667, Lb7G34684, Lb7G34766, Lb7G34767, Lb7G34778, Lb7G34790, Lb7G35224, Lb7G35252, Lb7G35388, Lb7G35405, Lb7G35411, Lb7G35542, Lb7G35545, Lb8G35638, Lb8G35639, Lb8G35768, Lb8G35859, Lb8G35969, Lb8G36442, Lb8G36575
Poaceae	Lolium multiflorum	4	gene-QYE76_040894, gene-QYE76_049498, gene-QYE76_050588 ... gene-QYE76_070047