halophFGD

Basic Information

Locus ID: Lb2G11984

Species & Taxonomic ID: Limonium bicolor & 293754

Genome Assembly: GCA_023374045.1

Description: Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr02	214035553	214042975	+	Lb2G11984

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.45	129,692.46 Da	55.94	70.78	-0.68

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd18635	CD_CMT3_like	708	764	1.13415E-29	-
CDD	cd18635	CD_CMT3_like	708	764	1.13415E-29	-
Pfam	PF00385	Chromo (CHRromatin Organisation MOdifier) domain	710	764	3.9E-11	IPR023780
Pfam	PF00145	C-5 cytosine-specific DNA methylase	769	1121	1.1E-41	IPR001525
Pfam	PF00385	Chromo (CHRromatin Organisation MOdifier) domain	710	764	3.9E-11	IPR023780
Pfam	PF01426	BAH domain	455	567	3.7E-12	IPR001025
Pfam	PF00145	C-5 cytosine-specific DNA methylase	769	1121	1.1E-41	IPR001525
Pfam	PF01426	BAH domain	455	567	3.7E-12	IPR001025
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	607	1122	1.28E-79	IPR029063
SUPERFAMILY	SSF54160	Chromo domain-like	695	770	3.78E-14	IPR016197
SUPERFAMILY	SSF54160	Chromo domain-like	695	770	3.78E-14	IPR016197
SUPERFAMILY	SSF53335	S-adenosyl-L-methionine-dependent methyltransferases	607	1122	1.28E-79	IPR029063
Gene3D	G3DSA:2.30.30.490	-	390	554	9.0E-48	IPR043151
Gene3D	G3DSA:2.30.30.490	-	390	554	9.0E-48	IPR043151
Gene3D	G3DSA:3.90.120.10	DNA Methylase, subunit A, domain 2	928	1088	3.3E-229	-
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	607	1139	3.3E-229	-
Gene3D	G3DSA:3.90.120.10	DNA Methylase, subunit A, domain 2	928	1088	3.3E-229	-
Gene3D	G3DSA:3.40.50.150	Vaccinia Virus protein VP39	607	1139	3.3E-229	-
SMART	SM00439	BAH_4	454	569	2.7E-19	IPR001025
SMART	SM00298	chromo_7	708	767	3.6E-12	IPR000953
SMART	SM00298	chromo_7	708	767	3.6E-12	IPR000953
SMART	SM00439	BAH_4	454	569	2.7E-19	IPR001025
TIGRFAM	TIGR00675	dcm: DNA (cytosine-5-)-methyltransferase	776	1119	3.1E-34	IPR001525
TIGRFAM	TIGR00675	dcm: DNA (cytosine-5-)-methyltransferase	776	1119	3.1E-34	IPR001525
PIRSF	PIRSF037404	DNMT1	405	578	6.5E-6	IPR017198
PIRSF	PIRSF037404	DNMT1	759	1015	2.4E-48	IPR017198
PIRSF	PIRSF037404	DNMT1	1044	1135	1.2E-24	IPR017198
PIRSF	PIRSF037404	DNMT1	46	386	1100.0	IPR017198
PIRSF	PIRSF037404	DNMT1	596	682	1.3E-4	IPR017198
PIRSF	PIRSF037404	DNMT1	307	439	13.0	IPR017198
PIRSF	PIRSF037404	DNMT1	1044	1135	1.2E-24	IPR017198
PIRSF	PIRSF037404	DNMT1	307	439	13.0	IPR017198
PIRSF	PIRSF037404	DNMT1	46	386	1100.0	IPR017198
PIRSF	PIRSF037404	DNMT1	596	682	1.3E-4	IPR017198
PIRSF	PIRSF037404	DNMT1	759	1015	2.4E-48	IPR017198
PIRSF	PIRSF037404	DNMT1	405	578	6.5E-6	IPR017198
ProSiteProfiles	PS51679	C-5 cytosine-specific DNA methylase (Dnmt) domain profile.	605	1129	49.261852	IPR001525
ProSiteProfiles	PS50013	Chromo and chromo shadow domain profile.	709	774	13.372001	IPR000953
ProSiteProfiles	PS50013	Chromo and chromo shadow domain profile.	709	774	13.372001	IPR000953
ProSiteProfiles	PS51038	BAH domain profile.	454	569	18.011051	IPR001025
ProSiteProfiles	PS51679	C-5 cytosine-specific DNA methylase (Dnmt) domain profile.	605	1129	49.261852	IPR001525
ProSiteProfiles	PS51038	BAH domain profile.	454	569	18.011051	IPR001025
ProSitePatterns	PS00598	Chromo domain signature.	732	752	-	IPR023779
ProSitePatterns	PS00095	C-5 cytosine-specific DNA methylases C-terminal signature.	1104	1122	-	IPR031303
ProSitePatterns	PS00094	C-5 cytosine-specific DNA methylases active site.	779	791	-	IPR018117
ProSitePatterns	PS00598	Chromo domain signature.	732	752	-	IPR023779
ProSitePatterns	PS00094	C-5 cytosine-specific DNA methylases active site.	779	791	-	IPR018117
ProSitePatterns	PS00095	C-5 cytosine-specific DNA methylases C-terminal signature.	1104	1122	-	IPR031303
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	868	881	6.7E-11	IPR001525
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	606	622	6.7E-11	IPR001525
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	868	881	6.7E-11	IPR001525
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	606	622	6.7E-11	IPR001525
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	822	836	6.7E-11	IPR001525
PRINTS	PR00105	Cytosine-specific DNA methyltransferase signature	822	836	6.7E-11	IPR001525
MobiDBLite	mobidb-lite	consensus disorder prediction	46	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	365	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	121	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	203	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	16	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	73	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	203	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	46	64	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	73	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	16	42	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	249	266	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	354	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	104	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	310	338	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	276	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	249	266	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	365	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	310	338	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	276	293	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	354	388	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	121	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	104	141	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	338	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	323	338	-	-
Coils	Coil	Coil	692	712	-	-
Coils	Coil	Coil	692	712	-	-

Gene Ontology

Molecular Function:

GO:0003682 (chromatin binding) GO:0003886 (DNA (cytosine-5-)-methyltransferase activity) GO:0008168 (methyltransferase activity)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K00558 (DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37])

Pathway:

ko00270 (Cysteine and methionine metabolism) map00270 (Cysteine and methionine metabolism) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00035 (Methionine degradation)

Reaction:

R04858 (S-Adenosyl-L-methionine + DNA cytosine <=> S-Adenosyl-L-homocysteine + 5-Methylcytosine in DNA)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19020.2	-
RefSeq	XP_021765549.1	DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa]
Swiss-Prot	Q94F87	DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3
TrEMBL	A0A0K9RVU1	Cytosine-specific methyltransferase OS=Spinacia oleracea OX=3562 GN=SOVF_028590 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13794, jg23605, jg36130
Aizoaceae	Mesembryanthemum crystallinum	4	gene_12059, gene_2168, gene_23938, gene_3430
Amaranthaceae	Atriplex hortensis	3	Ah004889, Ah018388, Ah027458
Amaranthaceae	Beta vulgaris	4	BVRB_3g050080, BVRB_4g071490, BVRB_5g107290, BVRB_7g164870
Amaranthaceae	Salicornia bigelovii	8	Sbi_jg13016, Sbi_jg14869, Sbi_jg18035, Sbi_jg23779 ... Sbi_jg52856, Sbi_jg55645, Sbi_jg62665, Sbi_jg7611
Amaranthaceae	Salicornia europaea	4	Seu_jg12410, Seu_jg1264, Seu_jg26200, Seu_jg9012
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00010231, GOSA_00010921, GOSA_00014366, GOSA_00017942
Amaranthaceae	Suaeda glauca	8	Sgl01110, Sgl06195, Sgl23814, Sgl28979, Sgl33949, Sgl39332 ... Sgl51217, Sgl56517
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000267, gene:ENSEOMG00000001655 ... gene:ENSEOMG00000005549, gene:ENSEOMG00000021096, gene:ENSEOMG00000024208, gene:ENSEOMG00000025935, gene:ENSEOMG00000029648, gene:ENSEOMG00000031445, gene:ENSEOMG00000040689, gene:ENSEOMG00000046216
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.3AG0007160, CQ.Regalona.r1.3BG0007170 ... CQ.Regalona.r1.4AG0000540, CQ.Regalona.r1.4BG0000630, CQ.Regalona.r1.5AG0001530, CQ.Regalona.r1.6AG0024980, CQ.Regalona.r1.6BG0026480
Anacardiaceae	Pistacia vera	5	pistato.v30030200, pistato.v30054360, pistato.v30172360 ... pistato.v30172370, pistato.v30197810
Apiaceae	Apium graveolens	4	Ag11G04623, Ag11G05049, Ag11G05071, Ag8G01105
Arecaceae	Cocos nucifera	3	COCNU_04G007180, COCNU_04G007220, COCNU_05G008940
Arecaceae	Phoenix dactylifera	2	gene-LOC103707986, gene-LOC103712941
Asparagaceae	Asparagus officinalis	6	AsparagusV1_01.1635.V1.1, AsparagusV1_01.2680.V1.1 ... AsparagusV1_01.2681.V1.1, AsparagusV1_03.2173.V1.1, AsparagusV1_05.968.V1.1, AsparagusV1_08.89.V1.1
Asteraceae	Flaveria trinervia	3	Ftri13G13364, Ftri2G01683, Ftri7G08977
Brassicaceae	Arabidopsis thaliana	3	AT1G69770.1, AT1G80740.1, AT4G19020.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10006850m.g.v1.0, Thhalv10018159m.g.v1.0 ... Thhalv10024250m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g10040.v2.2, Sp2g28030.v2.2, Sp7g17750.v2.2
Brassicaceae	Brassica nigra	4	BniB04g028310.2N, BniB05g017360.2N, BniB06g013250.2N ... BniB06g013260.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0137, Ceq05G2187
Casuarinaceae	Casuarina glauca	2	Cgl01G0122, Cgl05G2282
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno15g07660, gene.Cymno16g05000
Dunaliellaceae	Dunaliella salina	1	Dusal.0129s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g07140
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG05.910, evm.TU.LG08.1063, evm.TU.LG08.789 ... evm.TU.LG09.452
Plantaginaceae	Plantago ovata	7	Pov_00000623, Pov_00019906, Pov_00020850, Pov_00022750 ... Pov_00028526, Pov_00033087, Pov_00033105
Plumbaginaceae	Limonium bicolor	4	Lb2G11984, Lb2G14941, Lb2G14947, Lb7G33201
Poaceae	Echinochloa crus-galli	6	AH01.2711, AH05.592, BH01.3040, BH05.642, CH01.3251 ... CH05.744
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0119120, gene-QOZ80_2BG0173050 ... gene-QOZ80_5AG0401060, gene-QOZ80_5BG0449640
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.4HG0386550.1, HORVU.MOREX.r3.4HG0394000.1 ... HORVU.MOREX.r3.6HG0628050.1
Poaceae	Lolium multiflorum	14	gene-QYE76_028897, gene-QYE76_029117, gene-QYE76_029530 ... gene-QYE76_030995, gene-QYE76_035944, gene-QYE76_035963, gene-QYE76_036534, gene-QYE76_036535, gene-QYE76_036900, gene-QYE76_036923, gene-QYE76_048451, gene-QYE76_057611, gene-QYE76_068908, gene-QYE76_069568
Poaceae	Oryza coarctata	4	Oco09G004880, Oco10G003930, Oco19G000130, Oco20G000170
Poaceae	Oryza sativa	4	LOC_Os03g12570.1, LOC_Os05g13780.1, LOC_Os05g13790.1 ... LOC_Os10g01570.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G251500, gene-BS78_09G088600, gene-BS78_K225600
Poaceae	Puccinellia tenuiflora	11	Pt_Chr0102392, Pt_Chr0104248, Pt_Chr0104250, Pt_Chr0200522 ... Pt_Chr0200523, Pt_Chr0200524, Pt_Chr0200526, Pt_Chr0200846, Pt_Chr0306853, Pt_Chr0306855, Pt_Chr0405152
Poaceae	Sporobolus alterniflorus	4	Chr03G002470, Chr08G002600, Chr09G006770, Chr13G017990
Poaceae	Thinopyrum elongatum	8	Tel4E01G357200, Tel4E01G403300, Tel6E01G055600 ... Tel6E01G475200, Tel6E01G688100, Tel7E01G004700, Tel7E01G005700, Tel7E01G960000
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG041150, gene_TRIDC4AG009670 ... gene_TRIDC4AG013990, gene_TRIDC4AG070470, gene_TRIDC4BG036340, gene_TRIDC4BG041110, gene_TRIDC6AG001840, gene_TRIDC6AG056600, gene_TRIDC6BG002370, gene_TRIDC6BG066120
Poaceae	Triticum aestivum	14	TraesCS4A02G077400.1, TraesCS4A02G102700.2 ... TraesCS4B02G201800.1, TraesCS4B02G233500.1, TraesCS4D02G202600.2, TraesCS4D02G234700.1, TraesCS6A02G015800.1, TraesCS6A02G380200.1, TraesCS6B02G022800.1, TraesCS6B02G419000.1, TraesCS6D02G018700.1, TraesCS6D02G364900.1, TraesCS7B02G474900.1, TraesCS7D02G537800.1
Poaceae	Zoysia japonica	3	nbis-gene-17933, nbis-gene-17934, nbis-gene-38248
Poaceae	Zoysia macrostachya	2	Zma_g15807, Zma_g27881
Portulacaceae	Portulaca oleracea	8	evm.TU.LG01.353, evm.TU.LG01.643, evm.TU.LG04.129 ... evm.TU.LG04.2961, evm.TU.LG04.402, evm.TU.LG16.645, evm.TU.LG18.1131, evm.TU.LG20.740
Posidoniaceae	Posidonia oceanica	3	gene.Posoc07g10180, gene.Posoc07g15600, gene.Posoc09g01100
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_14_RagTag.753, evm.TU.Scaffold_7_RagTag.1729 ... evm.TU.Scaffold_8_RagTag.57
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-10299, nbisL1-mrna-17713
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-13149, nbisL1-mrna-17591
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-17094, nbisL1-mrna-17703
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.950, evm.TU.utg000025l.3
Rhizophoraceae	Kandelia obovata	2	Maker00003298, Maker00012350
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-15850, nbisL1-mrna-3061
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-11516, nbisL1-mrna-9003
Salicaceae	Populus euphratica	3	populus_peu04412, populus_peu34112, populus_peu35235
Solanaceae	Lycium barbarum	4	gene-LOC132604622, gene-LOC132609666, gene-LOC132626037 ... gene-LOC132626038
Solanaceae	Solanum chilense	3	SOLCI000047500, SOLCI003665100, SOLCI004429900
Solanaceae	Solanum pennellii	3	gene-LOC107007094, gene-LOC107008257, gene-LOC107028898
Tamaricaceae	Reaumuria soongarica	4	gene_13979, gene_15769, gene_3936, gene_7516
Tamaricaceae	Tamarix chinensis	2	TC01G4672, TC06G2785
Zosteraceae	Zostera marina	1	Zosma03g15410.v3.1