Basic Information
Locus ID:
Lb2G11805
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
DNA damage-inducible protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 206175333 | 206183889 | + | Lb2G11805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 56,711.25 Da | 42.35 | 88.15 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05479 | RP_DDI | 290 | 425 | 4.13266E-64 | IPR019103 |
| CDD | cd05479 | RP_DDI | 290 | 425 | 4.13266E-64 | IPR019103 |
| Pfam | PF09668 | Aspartyl protease | 283 | 417 | 1.3E-45 | IPR019103 |
| Pfam | PF09668 | Aspartyl protease | 283 | 417 | 1.3E-45 | IPR019103 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 51 | 4.58E-5 | IPR029071 |
| SUPERFAMILY | SSF50630 | Acid proteases | 290 | 418 | 1.73E-20 | IPR021109 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 51 | 4.58E-5 | IPR029071 |
| SUPERFAMILY | SSF50630 | Acid proteases | 290 | 418 | 1.73E-20 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 284 | 442 | 4.1E-35 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 284 | 442 | 4.1E-35 | IPR021109 |
| ProSiteProfiles | PS50175 | Aspartyl protease, retroviral-type family profile. | 317 | 356 | 8.710766 | IPR001995 |
| ProSiteProfiles | PS50175 | Aspartyl protease, retroviral-type family profile. | 317 | 356 | 8.710766 | IPR001995 |
| Coils | Coil | Coil | 45 | 65 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
| Coils | Coil | Coil | 45 | 65 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13235.3 | ubiquitin family protein. | 0 |
| RefSeq | XP_030930040.1 | protein DNA-DAMAGE INDUCIBLE 1 [Quercus lobata] | 0 |
| Q1EBV4 | Protein DNA-DAMAGE INDUCIBLE 1 OS=Arabidopsis thaliana OX=3702 GN=DDI1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2R8F1 | DNA damage-inducible protein 1 OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21648 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12095 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah009134, Ah034514 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g091100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18596, Sbi_jg37020 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4870 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017272 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23631, Sgl28831 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010142, gene:ENSEOMG00000029951 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0000210, CQ.Regalona.r1.4BG0026680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30151470 |
| Apiaceae | Apium graveolens | 1 | Ag2G02306 |
| Arecaceae | Cocos nucifera | 1 | scaffold016239G000080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710672 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2141.V1.1, AsparagusV1_05.737.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G01156, Ftri16G30473 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G13235.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020839m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g11470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB07g026840.2N, BniB07g055720.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1550 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1712 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04590 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0891s00004.v1.0, Dusal.0891s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g19250 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1490, nbisL1-mrna-1491 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037978 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G11792, Lb2G11805 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.730, BH07.860, CH07.617 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0105190, gene-QOZ80_2BG0158640 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0572580.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021350 |
| Poaceae | Oryza coarctata | 1 | Oco03G004780 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G075500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202115, Pt_Chr0202159 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G328000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG022880, gene_TRIDC6BG028480 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G161500.1, TraesCS6B02G189600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb205890_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44068 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15139 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g09090 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.33 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19729 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4035 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22371 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.18 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010474 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7973 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22558 |
| Salicaceae | Populus euphratica | 3 | populus_peu00037, populus_peu17072, populus_peu17114 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627734 |
| Solanaceae | Solanum chilense | 1 | SOLCI006742700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002395 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.24583_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2541 |
| Zosteraceae | Zostera marina | 1 | Zosma03g08920.v3.1 |