Basic Information
Locus ID:
Lb2G11611
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 189011823 | 189015336 | + | Lb2G11611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 31,207.74 Da | 49.33 | 56.68 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 4.0E-21 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 201 | 258 | 2.8E-25 | IPR039512 |
| Pfam | PF14599 | Zinc-ribbon | 201 | 258 | 2.8E-25 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 152 | 195 | 1.1E-6 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 152 | 195 | 1.1E-6 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 18 | 98 | 4.0E-21 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 15 | 87 | 2.62E-19 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 203 | 1.93E-10 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 15 | 87 | 2.62E-19 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 8.89E-21 | IPR037275 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 89 | 146 | 8.89E-21 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 151 | 203 | 1.93E-10 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 226 | 262 | 6.0E-17 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 226 | 262 | 6.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 225 | 2.0E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 225 | 2.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 153 | 195 | 9.5E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 153 | 195 | 9.5E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 26.670023 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 33.783707 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.530333 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 11 | 86 | 26.670023 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 196 | 11.530333 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 88 | 152 | 33.783707 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_048440569.1 | E3 ubiquitin-protein ligase MIEL1 [Pyrus x bretschneideri] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A540L0M3 | E3 ubiquitin-protein ligase MIEL1-like OS=Malus baccata OX=106549 GN=C1H46_034404 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology