Basic Information
Locus ID:
Lb2G11508
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 181653008 | 181673544 | - | Lb2G11508 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 113,384.96 Da | 44.80 | 88.85 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 471 | 654 | 3.4E-40 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 217 | 430 | 9.0E-60 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 217 | 430 | 9.0E-60 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 471 | 654 | 3.4E-40 | IPR031595 |
| SUPERFAMILY | SSF52058 | L domain-like | 651 | 828 | 2.49E-13 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 651 | 828 | 2.49E-13 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 767 | 922 | 1.5E-6 | IPR032675 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 225 | 654 | 1.1E-162 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 478 | 630 | 1.1E-162 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 225 | 654 | 1.1E-162 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 478 | 630 | 1.1E-162 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 767 | 922 | 1.5E-6 | IPR032675 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 225 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_002267905.2 | PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Vitis vinifera] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5BSF3 | ribonuclease P OS=Nyssa sinensis OX=561372 GN=F0562_020350 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology