Basic Information
Locus ID:
Lb2G11469
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 179414267 | 179421652 | + | Lb2G11469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 70,213.86 Da | 43.54 | 95.49 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 319 | 590 | 2.39411E-163 | - |
| CDD | cd14664 | STK_BAK1_like | 319 | 590 | 2.39411E-163 | - |
| Pfam | PF00069 | Protein kinase domain | 314 | 585 | 2.4E-44 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 153 | 188 | 3.6E-6 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 77 | 9.9E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 314 | 585 | 2.4E-44 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 153 | 188 | 3.6E-6 | IPR025875 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 77 | 9.9E-10 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 588 | 7.38E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 201 | 2.18E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 588 | 7.38E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 40 | 201 | 2.18E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 223 | 2.1E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 282 | 389 | 6.0E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 37 | 223 | 2.1E-63 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 282 | 389 | 6.0E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 390 | 607 | 1.2E-70 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 390 | 607 | 1.2E-70 | - |
| SMART | SM00220 | serkin_6 | 313 | 587 | 7.9E-34 | IPR000719 |
| SMART | SM00220 | serkin_6 | 313 | 587 | 7.9E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 600 | 36.583752 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 313 | 600 | 36.583752 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 319 | 341 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 436 | 448 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 319 | 341 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 436 | 448 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_047340892.1 | somatic embryogenesis receptor kinase 1 isoform X2 [Impatiens glandulifera] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SUH7 | somatic embryogenesis receptor kinase 2 OS=Sesamum indicum OX=4182 GN=LOC105158921 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology