Basic Information
Locus ID:
Lb2G11298
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
1-phosphatidylinositol-3-phosphate 5-kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 169919068 | 169932006 | + | Lb2G11298 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 153,102.11 Da | 44.36 | 75.83 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 369 | 641 | 2.31573E-128 | - |
| CDD | cd03334 | Fab1_TCP | 369 | 641 | 2.31573E-128 | - |
| Pfam | PF01363 | FYVE zinc finger | 31 | 101 | 1.2E-18 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 390 | 636 | 2.1E-29 | IPR002423 |
| Pfam | PF01363 | FYVE zinc finger | 31 | 101 | 1.2E-18 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 390 | 636 | 2.1E-29 | IPR002423 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 435 | 607 | 1.95E-41 | IPR027409 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 29 | 101 | 6.24E-20 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 29 | 101 | 6.24E-20 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 435 | 607 | 1.95E-41 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 105 | 1.4E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 607 | 1.5E-51 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 20 | 105 | 1.4E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 433 | 607 | 1.5E-51 | IPR027409 |
| SMART | SM00064 | fyve_4 | 26 | 102 | 1.5E-20 | IPR000306 |
| SMART | SM00064 | fyve_4 | 26 | 102 | 1.5E-20 | IPR000306 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 34 | 101 | 13.307721 | IPR017455 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 34 | 101 | 13.307721 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1129 | 1200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1175 | 1189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1148 | 1162 | - | - |
| Coils | Coil | Coil | 1056 | 1083 | - | - |
| Coils | Coil | Coil | 1056 | 1083 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_010273819.1 | PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Nelumbo nucifera] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U8B3F2 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Nelumbo nucifera OX=4432 GN=LOC104609260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology