Basic Information
Locus ID:
Lb2G11189
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 161273544 | 161276019 | - | Lb2G11189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.19 | 25,855.83 Da | 47.03 | 89.48 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 106 | 225 | 2.31086E-62 | IPR000608 |
| CDD | cd00195 | UBCc | 106 | 225 | 2.31086E-62 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 98 | 224 | 1.2E-48 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 98 | 224 | 1.2E-48 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 104 | 230 | 3.22E-56 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 104 | 230 | 3.22E-56 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 90 | 231 | 1.7E-63 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 90 | 231 | 1.7E-63 | IPR016135 |
| SMART | SM00212 | ubc_7 | 77 | 230 | 8.0E-63 | - |
| SMART | SM00212 | ubc_7 | 77 | 230 | 8.0E-63 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 81 | 230 | 53.853321 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 81 | 230 | 53.853321 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 157 | 172 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 157 | 172 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.3 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_042045335.1 | ubiquitin-conjugating enzyme E2-17 kDa-like [Salvia splendens] | 0 |
| P35135 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A0A251SWN6 | Putative ubiquitin-conjugating enzyme/RWD-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0415931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology