Basic Information
Locus ID:
Lb2G11088
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Short Name:
UBC5
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 154064781 | 154068270 | - | Lb2G11088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 20,901.37 Da | 54.62 | 59.67 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 3.04945E-52 | IPR000608 |
| CDD | cd00195 | UBCc | 7 | 143 | 3.04945E-52 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 142 | 2.5E-39 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 142 | 2.5E-39 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 148 | 4.98E-47 | IPR016135 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 148 | 4.98E-47 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 161 | 3.3E-51 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 161 | 3.3E-51 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 1.7E-52 | - |
| SMART | SM00212 | ubc_7 | 4 | 148 | 1.7E-52 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.831165 | IPR000608 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 42.831165 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 183 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.1 | ubiquitin conjugating enzyme 4. Belongs to Ubiquitin conjugating enzyme family. Gene expression is developmentally regulated. | 0 |
| RefSeq | XP_011080934.1 | ubiquitin-conjugating enzyme E2 4 [Sesamum indicum] | 0 |
| P42748 | Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana OX=3702 GN=UBC4 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5B7BNR8 | Putative ubiquitin-conjugating enzyme E2 OS=Davidia involucrata OX=16924 GN=Din_039950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology