Basic Information
Locus ID:
Lb2G11079
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 153590853 | 153596125 | + | Lb2G11079 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 77,658.58 Da | 42.42 | 85.93 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 612 | 652 | 2.89069E-20 | - |
| CDD | cd01989 | STK_N | 38 | 182 | 3.89801E-34 | - |
| CDD | cd01989 | STK_N | 38 | 182 | 3.89801E-34 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 612 | 652 | 2.89069E-20 | - |
| Pfam | PF00069 | Protein kinase domain | 367 | 581 | 3.9E-21 | IPR000719 |
| Pfam | PF00069 | Protein kinase domain | 367 | 581 | 3.9E-21 | IPR000719 |
| Pfam | PF04564 | U-box domain | 609 | 677 | 2.0E-20 | IPR003613 |
| Pfam | PF04564 | U-box domain | 609 | 677 | 2.0E-20 | IPR003613 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 50 | 148 | 7.03E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 584 | 2.45E-42 | IPR011009 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 316 | 584 | 2.45E-42 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 50 | 148 | 7.03E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 599 | 677 | 1.41E-27 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 599 | 677 | 1.41E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 400 | 600 | 7.0E-36 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 607 | 681 | 3.8E-29 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 399 | 5.4E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 607 | 681 | 3.8E-29 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 311 | 399 | 5.4E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 400 | 600 | 7.0E-36 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 36 | 151 | 5.9E-5 | IPR014729 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 36 | 151 | 5.9E-5 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 611 | 673 | 3.6E-29 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 611 | 673 | 3.6E-29 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 594 | 20.753672 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 607 | 680 | 35.623402 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 607 | 680 | 35.623402 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 311 | 594 | 20.753672 | IPR000719 |
| Coils | Coil | Coil | 219 | 264 | - | - |
| Coils | Coil | Coil | 219 | 264 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_010670272.2 | U-box domain-containing protein 33 isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9RIX6 | Serine/threonine-protein kinase OS=Spinacia oleracea OX=3562 GN=SOVF_061320 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology