Basic Information
Locus ID:
Lb2G11073
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 153205815 | 153210217 | + | Lb2G11073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 87,296.10 Da | 48.80 | 92.51 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 32 | 168 | 2.24256E-28 | - |
| CDD | cd01989 | STK_N | 32 | 168 | 2.24256E-28 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 696 | 737 | 1.5282E-21 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 696 | 737 | 1.5282E-21 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 451 | 666 | 3.0E-17 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 451 | 666 | 3.0E-17 | IPR001245 |
| Pfam | PF04564 | U-box domain | 693 | 761 | 3.2E-16 | IPR003613 |
| Pfam | PF04564 | U-box domain | 693 | 761 | 3.2E-16 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 666 | 3.56E-38 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 685 | 760 | 1.24E-23 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 399 | 666 | 3.56E-38 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 685 | 760 | 1.24E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 762 | 1.7E-24 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 690 | 762 | 1.7E-24 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 486 | 679 | 8.0E-36 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 379 | 484 | 1.4E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 379 | 484 | 1.4E-7 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 486 | 679 | 8.0E-36 | - |
| SMART | SM00504 | Ubox_2 | 695 | 758 | 1.7E-25 | IPR003613 |
| SMART | SM00504 | Ubox_2 | 695 | 758 | 1.7E-25 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 397 | 678 | 19.948034 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 397 | 678 | 19.948034 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 691 | 762 | 38.648628 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 691 | 762 | 38.648628 | IPR003613 |
| Coils | Coil | Coil | 208 | 253 | - | - |
| Coils | Coil | Coil | 208 | 253 | - | - |
| Coils | Coil | Coil | 308 | 353 | - | - |
| Coils | Coil | Coil | 308 | 353 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021748908.1 | U-box domain-containing protein 33-like [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7C8Z8M0 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology