Basic Information
Locus ID:
Lb2G11007
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 149632289 | 149634444 | + | Lb2G11007 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 45,177.72 Da | 57.95 | 82.72 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 344 | 386 | 7.54347E-15 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 344 | 386 | 7.54347E-15 | - |
| Pfam | PF13639 | Ring finger domain | 344 | 386 | 1.2E-9 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 344 | 386 | 1.2E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 392 | 2.2E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 392 | 2.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 392 | 5.6E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 329 | 392 | 5.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 345 | 385 | 6.2E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 345 | 385 | 6.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 386 | 11.928664 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 345 | 386 | 11.928664 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63170.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_049403284.1 | E3 ubiquitin-protein ligase At1g63170-like [Solanum stenotomum] | 0 |
| Q8LDB8 | E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana OX=3702 GN=At1g63170 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G3CGP3 | E3 ubiquitin-protein ligase OS=Capsicum chinense OX=80379 GN=BC332_13560 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||