Basic Information
Locus ID:
Lb2G11000
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 149451592 | 149453670 | - | Lb2G11000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 41,701.78 Da | 71.31 | 76.12 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 312 | 354 | 8.7E-13 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 312 | 354 | 8.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 359 | 1.77E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 303 | 359 | 1.77E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 367 | 4.5E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 301 | 367 | 4.5E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 313 | 353 | 2.4E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 313 | 353 | 2.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 313 | 354 | 12.504031 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 313 | 354 | 12.504031 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 28 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61180.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042011429.1 | E3 ubiquitin-protein ligase At1g12760-like [Salvia splendens] | 0 |
| Q93Z92 | E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana OX=3702 GN=At4g11680 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2Z7AZE4 | RING-type domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_34324 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology