Basic Information
Locus ID:
Lb2G10943
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
proteinaceous RNase P 1, chloroplastic mitochondrial-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 144024700 | 144037238 | - | Lb2G10943 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 61,847.48 Da | 50.22 | 79.84 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 136 | 282 | 1.4E-53 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 325 | 513 | 7.6E-39 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 136 | 282 | 1.4E-53 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 1 | 49 | 2.9E-12 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 325 | 513 | 7.6E-39 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 1 | 49 | 2.9E-12 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 133 | 341 | 1.8E-99 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 133 | 341 | 1.8E-99 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 342 | 385 | 1.8E-99 | - |
| Gene3D | G3DSA:3.40.50.11980 | - | 386 | 485 | 2.5E-50 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 46 | 2.8E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 486 | 516 | 2.5E-50 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 46 | 2.8E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 486 | 516 | 2.5E-50 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 386 | 485 | 2.5E-50 | - |
| Gene3D | G3DSA:3.40.50.11980 | - | 342 | 385 | 1.8E-99 | - |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 199 | 230 | 0.0026 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 199 | 230 | 0.0026 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 196 | 230 | 9.602157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 196 | 230 | 9.602157 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 118 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_010688235.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X3 [Beta vulgaris subsp. vulgaris] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | F6HH14 | ribonuclease P OS=Vitis vinifera OX=29760 GN=VIT_11s0016g03700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology