Basic Information
Locus ID:
Lb2G10920
Species & Taxonomic ID:
Limonium bicolor & 293754
Genome Assembly:
GCA_023374045.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 142875112 | 142880285 | + | Lb2G10920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 82,781.46 Da | 38.05 | 91.35 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 665 | 1.61679E-150 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 365 | 665 | 1.61679E-150 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 47 | 348 | 1.0536E-159 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 47 | 348 | 1.0536E-159 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 370 | 660 | 2.2E-29 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 370 | 660 | 2.2E-29 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 45 | 348 | 1.75E-36 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 364 | 666 | 6.28E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 45 | 348 | 1.75E-36 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 364 | 666 | 6.28E-40 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 363 | 665 | 9.3E-48 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 46 | 349 | 1.4E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 46 | 349 | 1.4E-31 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 363 | 665 | 9.3E-48 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 365 | 666 | 34.735416 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 47 | 349 | 29.562912 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 365 | 666 | 34.735416 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 47 | 349 | 29.562912 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 717 | 738 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_006452490.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Citrus clementina] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5B6Z5I1 | glycerophosphodiester phosphodiesterase OS=Davidia involucrata OX=16924 GN=Din_008549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology